RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IKZF4Q9H2S9 585 aa12.56□□□□□ -0.4
CLK3-222ENST00000568232 WSB2Q9NYS7 404 aaPredicted RBP12.56□□□□□ -0.4
CLK3-222ENST00000568232 GMIPQ9P107 970 aa12.56□□□□□ -0.4
CLK3-222ENST00000568232 LARSQ9P2J5 1176 aaKnown RBP12.56□□□□□ -0.4
CLK3-222ENST00000568232 AGAP1Q9UPQ3 857 aa12.56□□□□□ -0.4
CLK3-222ENST00000568232 STARD13Q9Y3M8 1113 aa12.56□□□□□ -0.4
CLK3-222ENST00000568232 SLCO1B1Q9Y6L6 691 aa12.56□□□□□ -0.4
CLK3-222ENST00000568232 C2orf72A6NCS6 295 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 KCNJ18B7U540 433 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 PRRT4C9JH25 899 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 H0YCG3 227 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 K7ENM7 598 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 KCNK3O14649 394 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 RRP8O43159 456 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 OAS1P00973 400 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 ITGB3P05106 788 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 MAGEA11P43364 429 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 CSNK1EP49674 416 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 SLC12A3P55017 1021 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 PSMC1P62191 440 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 ADALQ6DHV7 355 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 SDE2Q6IQ49 451 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 FAM171BQ6P995 826 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 CRELD2Q6UXH1 353 aaPredicted RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 BBS7Q8IWZ6 715 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 WBP2Q969T9 261 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 MYLPFQ96A32 169 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 FUBP3Q96I24 572 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-222ENST00000568232 HNRNPABQ99729 332 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 GABRG3Q99928 467 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 TBC1D14Q9P2M4 693 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 MAGEC2Q9UBF1 373 aaPredicted RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 EIF2B4Q9UI10 523 aaKnown RBP12.55□□□□□ -0.4
CLK3-222ENST00000568232 PCDHGB2Q9Y5G2 931 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 MYOFQ9NZM1 2061 aa12.55□□□□□ -0.4
CLK3-222ENST00000568232 TCHHQ07283 1943 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 TEX51A0A1B0GUA7 166 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 E2F8A0AVK6 867 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 E9PAM4 449 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 GABRDO14764 452 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 HOXC11O43248 304 aaPredicted RBP12.54□□□□□ -0.4
CLK3-222ENST00000568232 LMO2P25791 158 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 KCNC4Q03721 635 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 TAF10Q12962 218 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 IL27RAQ6UWB1 636 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 ADGRF2Q8IZF7 708 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 TMEM86AQ8N2M4 240 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 MYCT1Q8N699 235 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 C1orf216Q8TAB5 229 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 NXPE2Q96DL1 559 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 ZFRQ96KR1 1074 aaKnown RBP12.54□□□□□ -0.4
CLK3-222ENST00000568232 TTLL2Q9BWV7 592 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 RAB34Q9BZG1 259 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 TRIM9Q9C026 710 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 SEMA4CQ9C0C4 833 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 CRTAC1Q9NQ79 661 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 SPHK2Q9NRA0 654 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 AGO2Q9UKV8 859 aaKnown RBP12.54□□□□□ -0.4
CLK3-222ENST00000568232 SNX11Q9Y5W9 270 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 SNX9Q9Y5X1 595 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 AK5Q9Y6K8 562 aa12.54□□□□□ -0.4
CLK3-222ENST00000568232 GOLGA4Q13439 2230 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 METTL12A8MUP2 240 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 TRIM66O15016 1216 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 PLA2G4BP0C869 781 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 JUPP14923 745 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 PLCG1P19174 1290 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 PNPLA4P41247 253 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 CXADRP78310 365 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 TFAMQ00059 246 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 CYP27A1Q02318 531 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 IFRD2Q12894 506 aaPredicted RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 SUZ12Q15022 739 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 SOWAHAQ2M3V2 549 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 KIF19Q2TAC6 998 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 GRAMD4Q6IC98 578 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 C4orf50Q6ZRC1 276 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 NUDT18Q6ZVK8 323 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 TMPRSS12Q86WS5 348 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 C1orf127Q8N9H9 656 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 FAM181AQ8N9Y4 354 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 KCNN1Q92952 543 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 ARID3AQ99856 593 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 REEP2Q9BRK0 252 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 MKRN2Q9H000 416 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 ITM2CQ9NQX7 267 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 DNAJC17Q9NVM6 304 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 USP36Q9P275 1121 aaKnown RBP12.53□□□□□ -0.4
CLK3-222ENST00000568232 NFE2L3Q9Y4A8 694 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 PCDHB6Q9Y5E3 794 aa12.53□□□□□ -0.4
CLK3-222ENST00000568232 MYO18AQ92614 2054 aaKnown RBP12.52□□□□□ -0.4
CLK3-222ENST00000568232 F8VP50 259 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 COCHO43405 550 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 IRF1P10914 325 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 ANXA13P27216 316 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 PCSK1P29120 753 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 LHX1P48742 406 aa12.52□□□□□ -0.41
CLK3-222ENST00000568232 TOB1P50616 345 aaPredicted RBP12.52□□□□□ -0.41
CLK3-222ENST00000568232 TPMTP51580 245 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms