RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RPL13P26373 211 aaKnown RBP19.81■□□□□ 0.76
CLN3-218ENST00000565688 GBP1P32455 592 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 TNFRSF4P43489 277 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 ASPAP45381 313 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 SLC6A11P48066 632 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 NDUFA8P51970 172 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 GAD2Q05329 585 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 LY6G5CQ5SRR4 150 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 C1orf220Q5T0J3 134 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 BTBD8Q5XKL5 378 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 CCDC33Q8N5R6 958 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 SCAND2PQ9GZW5 306 aaPredicted RBP19.81■□□□□ 0.76
CLN3-218ENST00000565688 CYP3A43Q9HB55 503 aa19.81■□□□□ 0.76
CLN3-218ENST00000565688 TLR8Q9NR97 1041 aaKnown RBP19.81■□□□□ 0.76
CLN3-218ENST00000565688 TPRP12270 2363 aaKnown RBP19.8■□□□□ 0.76
CLN3-218ENST00000565688 DCLK1O15075 740 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 KRT13P13646 458 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 MAP3K7CLP57077 242 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 INCA1Q0VD86 236 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 ORC1Q13415 861 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 SPOPLQ6IQ16 392 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 ANO7Q6IWH7 933 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 NUDT18Q6ZVK8 323 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 ALLCQ8N6M5 410 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 C12orf29Q8N999 325 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 ZMIZ2Q8NF64 920 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 HNRNPABQ99729 332 aaKnown RBP19.8■□□□□ 0.76
CLN3-218ENST00000565688 FAM49BQ9NUQ9 324 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 HMGXB4Q9UGU5 601 aa19.8■□□□□ 0.76
CLN3-218ENST00000565688 A0A1W2PQ27 194 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 A0A1W2PQ64 194 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 A0A1W2PQD8 194 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 BCLAF3A2AJT9 711 aaKnown RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 HOXC11O43248 304 aaPredicted RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 TLR5O60602 858 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 BEST1O76090 585 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 KLF8O95600 359 aaPredicted RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 CAVIN2O95810 425 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 PSMC2P35998 433 aaKnown RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 CREB5Q02930 508 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 GOLGA8FQ08AF8 430 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 GOLGA8DPQ0D2H9 430 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 DPYDQ12882 1025 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 EOGTQ5NDL2 527 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 STPG1Q5TH74 334 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 C12orf40Q86WS4 652 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 FAM186BQ8IYM0 893 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 GUF1Q8N442 669 aaKnown RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 IL17RCQ8NAC3 791 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 CCDC150Q8NCX0 1101 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 KCNV2Q8TDN2 545 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 CCDC34Q96HJ3 373 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 NT5C1AQ9BXI3 368 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 TPSD1Q9BZJ3 242 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 PNPLA8Q9NP80 782 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 POLMQ9NP87 494 aaPredicted RBP19.79■□□□□ 0.76
CLN3-218ENST00000565688 SPHK2Q9NRA0 654 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 SCML2Q9UQR0 700 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 ZDHHC9Q9Y397 364 aa19.79■□□□□ 0.76
CLN3-218ENST00000565688 PRR29P0C7W0 189 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 ADORA2BP29275 332 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 TIE1P35590 1138 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 KDSRQ06136 332 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 MESP2Q0VG99 397 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 PMS2CLQ68D20 193 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 KRBA2Q6ZNG9 492 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 SFTPA1Q8IWL2 248 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 BBS7Q8IWZ6 715 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 ETFBKMTQ8IXQ9 262 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 TXNDC5Q8NBS9 432 aaKnown RBP19.78■□□□□ 0.76
CLN3-218ENST00000565688 MDGA1Q8NFP4 955 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 CYFIP2Q96F07 1278 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 NIF3L1Q9GZT8 377 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 CYLDQ9NQC7 956 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 RXFP3Q9NSD7 469 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 DEC1Q9P2X7 70 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 PCDHA5Q9Y5H7 936 aa19.78■□□□□ 0.76
CLN3-218ENST00000565688 CNOT1A5YKK6 2376 aaKnown RBP19.78■□□□□ 0.76
CLN3-218ENST00000565688 CHD8Q9HCK8 2581 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TBC1D3BA6NDS4 549 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TM4SF5O14894 197 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TRIM49P0CI25 452 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TRIM49CP0CI26 452 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 CHRM1P11229 460 aaPredicted RBP19.77■□□□□ 0.76
CLN3-218ENST00000565688 GTF2H1P32780 548 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 ATP5C1P36542 298 aaKnown RBP19.77■□□□□ 0.76
CLN3-218ENST00000565688 KIR2DL1P43626 348 aaPredicted RBP19.77■□□□□ 0.76
CLN3-218ENST00000565688 GCLMP48507 274 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 ADAM9Q13443 819 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TMEM92Q6UXU6 159 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 CLEC20AQ6ZU45 233 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 HTR3DQ70Z44 454 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TRMT11Q7Z4G4 463 aaKnown RBP19.77■□□□□ 0.76
CLN3-218ENST00000565688 TTC30AQ86WT1 665 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 PHTF2Q8N3S3 785 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 OLIG1Q8TAK6 271 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 TAS1R2Q8TE23 839 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 WHAMMQ8TF30 809 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 CNTNAP3BQ96NU0 1288 aa19.77■□□□□ 0.76
CLN3-218ENST00000565688 CNTNAP3Q9BZ76 1288 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms