RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TMC5Q6UXY8 1006 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 SLC26A9Q7LBE3 791 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 GPR149Q86SP6 731 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 C12orf76Q8N812 135 aaPredicted RBP21.65■■□□□ 1.06
CLN3-212ENST00000564574 ACRBPQ8NEB7 543 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 CLEC4CQ8WTT0 213 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 ZNF830Q96NB3 372 aaPredicted RBP21.65■■□□□ 1.06
CLN3-212ENST00000564574 GCNAQ96QF7 691 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 THAP2Q9H0W7 228 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 MRPL47Q9HD33 250 aaKnown RBP21.65■■□□□ 1.06
CLN3-212ENST00000564574 TRPM5Q9NZQ8 1165 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 DNMT3BQ9UBC3 853 aaKnown RBP21.65■■□□□ 1.06
CLN3-212ENST00000564574 NOTCH4Q99466 2003 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 TCRBV5S1A1TA0A578 114 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 FAM170AA1A519 330 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 HSF2BPO75031 334 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 CYP1A2P05177 515 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 ZDHHC11BP0C7U3 371 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 VAV2P52735 878 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 FAM102AQ5T9C2 384 aaPredicted RBP21.64■■□□□ 1.05
CLN3-212ENST00000564574 SNX30Q5VWJ9 437 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 PDZD4Q76G19 769 aaPredicted RBP21.64■■□□□ 1.05
CLN3-212ENST00000564574 BEND5Q7L4P6 421 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 ARCQ7LC44 396 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 BHLHA9Q7RTU4 235 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 DNAAF5Q86Y56 855 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 SELENOOQ9BVL4 669 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 PACSIN1Q9BY11 444 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 ADAM7Q9H2U9 754 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 IL21Q9HBE4 155 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 ZNF334Q9HCZ1 680 aaPredicted RBP21.64■■□□□ 1.05
CLN3-212ENST00000564574 PARVAQ9NVD7 372 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 CLIC5Q9NZA1 410 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 GMIPQ9P107 970 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 REXO2Q9Y3B8 237 aaKnown RBP21.64■■□□□ 1.05
CLN3-212ENST00000564574 ADGRG1Q9Y653 693 aa21.64■■□□□ 1.05
CLN3-212ENST00000564574 SIGLEC16A6NMB1 481 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 YJEFN3A6XGL0 299 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 E7ENQ6 273 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 GOLGA8SH3BPF8 625 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 ZNF197O14709 1029 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 LTFP02788 710 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 F11P03951 625 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 RHOP08100 348 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 CCDC175P0C221 793 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 LTBRP36941 435 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 YWHAGP61981 247 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLN3-212ENST00000564574 HS1BP3Q53T59 392 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 CES5AQ6NT32 575 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 EP400NLQ6ZTU2 488 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 KIAA1328Q86T90 577 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 HS6ST3Q8IZP7 471 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 ZNF276Q8N554 614 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 MSLNLQ96KJ4 702 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 DESI2Q9BSY9 194 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 ABCC13Q9NSE7 274 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 DOCK6Q96HP0 2047 aa21.63■■□□□ 1.05
CLN3-212ENST00000564574 PJA2O43164 708 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 KRT3P12035 628 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 MYL4P12829 197 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 GABRR2P28476 465 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 YWHAZP63104 245 aaKnown RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 BTBD8Q5XKL5 378 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 GRASPQ7Z6J2 395 aaPredicted RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 SCD5Q86SK9 330 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 RHOT2Q8IXI1 618 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 FAM149B1Q96BN6 582 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 PIWIL1Q96J94 861 aaKnown RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 CDK5RAP1Q96SZ6 601 aaKnown RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 S1PR5Q9H228 398 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 POPDC2Q9HBU9 364 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 METTL5Q9NRN9 209 aaKnown RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 HCFC1R1Q9NWW0 138 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 UVRAGQ9P2Y5 699 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 MYO1AQ9UBC5 1043 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 CHORDC1Q9UHD1 332 aaPredicted RBP21.62■■□□□ 1.05
CLN3-212ENST00000564574 TMEM59LQ9UK28 342 aa21.62■■□□□ 1.05
CLN3-212ENST00000564574 A0A1W2PQH9 124 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 ZNF840PA6NDX5 716 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 SOBPA7XYQ1 873 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 ATMINO43313 823 aaPredicted RBP21.61■■□□□ 1.05
CLN3-212ENST00000564574 TADA3O75528 432 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 DAB1O75553 588 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 RALAP11233 206 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 PFKLP17858 780 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 TUBP50607 506 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 DLX2Q07687 328 aaPredicted RBP21.61■■□□□ 1.05
CLN3-212ENST00000564574 MAMLD1Q13495 774 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 TCEAL1Q15170 157 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 ATAT1Q5SQI0 421 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 PPP1R15BQ5SWA1 713 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 BSPRYQ5W0U4 402 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 GAREM2Q75VX8 874 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 TADA2BQ86TJ2 420 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 RFFLQ8WZ73 363 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 NDRG1Q92597 394 aaKnown RBP21.61■■□□□ 1.05
CLN3-212ENST00000564574 MRPS31Q92665 395 aaKnown RBP21.61■■□□□ 1.05
CLN3-212ENST00000564574 KHSRPQ92945 711 aaKnown RBP eCLIP21.61■■□□□ 1.05
CLN3-212ENST00000564574 ARHGEF26Q96DR7 871 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 RIPOR3Q96MK2 946 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms