RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FBXO44Q9H4M3 255 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 CYP3A43Q9HB55 503 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 TMEM8AQ9HCN3 771 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 TBC1D14Q9P2M4 693 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 NUDT5Q9UKK9 219 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ZNF292O60281 2723 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 FAM92AA1XBS5 289 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 HHLA1C9JL84 531 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 CETN3O15182 167 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 CYP26A1O43174 497 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TLR5O60602 858 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 LRP3O75074 770 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 CILPO75339 1184 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 KAT7O95251 611 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 APBB3O95704 486 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 ADH1CP00326 375 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 ADH5P11766 374 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TRIM21P19474 475 aaKnown RBP10.8□□□□□ -0.68
LDLR-214ENST00000560628 ACO1P21399 889 aaKnown RBP10.8□□□□□ -0.68
LDLR-214ENST00000560628 GTF2H1P32780 548 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TIE1P35590 1138 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 KDSRQ06136 332 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 INCA1Q0VD86 236 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 SF3A2Q15428 464 aaKnown RBP10.8□□□□□ -0.68
LDLR-214ENST00000560628 EDRF1Q3B7T1 1238 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 KRT39Q6A163 491 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 ISM2Q6H9L7 571 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 PRR23CQ6ZRP0 262 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 CLEC20AQ6ZU45 233 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TMEM25Q86YD3 366 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 KIAA1958Q8N8K9 716 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TSTD1Q8NFU3 115 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TATDN2Q93075 761 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 CCDC34Q96HJ3 373 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 ZDHHC4Q9NPG8 344 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 ARHGEF4Q9NR80 690 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 TLR8Q9NR97 1041 aaKnown RBP10.8□□□□□ -0.68
LDLR-214ENST00000560628 OSER1Q9NX31 292 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 SCML2Q9UQR0 700 aa10.8□□□□□ -0.68
LDLR-214ENST00000560628 WDR87Q6ZQQ6 2873 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 CEP250Q9BV73 2442 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 A0A1W2PQH9 124 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 MDM4O15151 490 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 KLF8O95600 359 aaPredicted RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 APODP05090 189 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 EPB41P11171 864 aaKnown RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 HNRNPLP14866 589 aaKnown RBP eCLIP10.79□□□□□ -0.68
LDLR-214ENST00000560628 TUBP50607 506 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 PMS1P54277 932 aaKnown RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 GAD2Q05329 585 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ENPEPQ07075 957 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 BECN1Q14457 450 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ANO4Q32M45 955 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 PLK5Q496M5 336 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 PPP1R26Q5T8A7 1209 aaPredicted RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 TCERG1LQ5VWI1 586 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 BTBD8Q5XKL5 378 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ANKRD40Q6AI12 368 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ANO7Q6IWH7 933 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 TMEM92Q6UXU6 159 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ALLCQ8N6M5 410 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 TXNDC5Q8NBS9 432 aaKnown RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 CCDC26Q8TAB7 109 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 ARID3AQ99856 593 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 RTKNQ9BST9 563 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 KLF16Q9BXK1 252 aaPredicted RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 TPSD1Q9BZJ3 242 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 DUSP15Q9H1R2 295 aaPredicted RBP10.79□□□□□ -0.68
LDLR-214ENST00000560628 SMOC1Q9H4F8 434 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 NMUR1Q9HB89 426 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 RMND1Q9NWS8 449 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 RAB20Q9NX57 234 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 EBF1Q9UH73 591 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 PCDHA5Q9Y5H7 936 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 DCHS1Q96JQ0 3298 aa10.79□□□□□ -0.68
LDLR-214ENST00000560628 MYOFQ9NZM1 2061 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 TBC1D3BA6NDS4 549 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 SGK1O00141 431 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 TRIM24O15164 1050 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 TULP3O75386 442 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 EPN2O95208 641 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 SMC2O95347 1197 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 RARGP13631 454 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 GBP1P32455 592 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 ATP5C1P36542 298 aaKnown RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 GRIA2P42262 883 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 MXI1P50539 228 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 NUCB2P80303 420 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 MRPS21P82921 87 aaKnown RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 CRY1Q16526 586 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 AASDHQ4L235 1098 aaPredicted RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 DCAF17Q5H9S7 520 aaPredicted RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 C10orf120Q5SQS8 335 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 ZNF658Q5TYW1 1059 aaPredicted RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 TPGS1Q6ZTW0 290 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 HTR3DQ70Z44 454 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 SCD5Q86SK9 330 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 C12orf50Q8NA57 414 aaPredicted RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 IL17RCQ8NAC3 791 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 FBXL13Q8NEE6 735 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms