RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C12orf65Q9H3J6 166 aaKnown RBP11.08□□□□□ -0.64
CUX1-217ENST00000558836 DHX35Q9H5Z1 703 aaKnown RBP11.08□□□□□ -0.64
CUX1-217ENST00000558836 KIAA1257Q9ULG3 409 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 CHMP2BQ9UQN3 213 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 CLUHO75153 1309 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 C17orf102A2RUQ5 167 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 GOLGA8RI6L899 631 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 TNPO2O14787 897 aaKnown RBP11.08□□□□□ -0.64
CUX1-217ENST00000558836 STAU1O95793 577 aaKnown RBP11.08□□□□□ -0.64
CUX1-217ENST00000558836 RBL1P28749 1068 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 LILRA4P59901 499 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 ROR1Q01973 937 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 STAT4Q14765 748 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 FAM47CQ5HY64 1035 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 NUGGCQ68CJ6 796 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 C6orf89Q6UWU4 347 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 PPIL6Q8IXY8 311 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 NAT8LQ8N9F0 302 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 TTC13Q8NBP0 860 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 APPL2Q8NEU8 664 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 FAXDC2Q96IV6 333 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 ZIC5Q96T25 663 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 ARHGAP39Q9C0H5 1083 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 PCDH18Q9HCL0 1135 aa11.08□□□□□ -0.64
CUX1-217ENST00000558836 GOLGA6L7A0A1B0GV03 622 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 ALOX15BO15296 676 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 CPT1AP50416 773 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 BCAR1P56945 870 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 ANKRD20A8PQ5CZ79 823 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PACS2Q86VP3 889 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 OSTM1Q86WC4 334 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 FAM131BQ86XD5 332 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 CCDC185Q8N715 623 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 LRRC52Q8N7C0 313 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 RNF169Q8NCN4 708 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 SPOCK2Q92563 424 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 TRIM56Q9BRZ2 755 aaKnown RBP11.07□□□□□ -0.64
CUX1-217ENST00000558836 RAB6BQ9NRW1 208 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 UNCXA6NJT0 531 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 GBE1Q04446 702 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PAN2Q504Q3 1202 aaKnown RBP11.07□□□□□ -0.64
CUX1-217ENST00000558836 WSCD1Q658N2 575 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 FAM47EQ6ZV65 393 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 MICALCLQ6ZW33 695 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 FAM228AQ86W67 206 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 ADGRF2Q8IZF7 708 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 TRPV1Q8NER1 839 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 CCDC110Q8TBZ0 833 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 MAML1Q92585 1016 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 UBN1Q9NPG3 1134 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 SHOC2Q9UQ13 582 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 EFR3BQ9Y2G0 817 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 C5orf60A6NFR6 353 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 HAS3O00219 553 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 DNM1LO00429 736 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PTGESO14684 152 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 HUS1O60921 280 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 ENDOD1O94919 500 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 STX2P32856 288 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 MLH1P40692 756 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PURAQ00577 322 aaKnown RBP11.07□□□□□ -0.64
CUX1-217ENST00000558836 ADIGQ0VDE8 80 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 ACAP1Q15027 740 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 CCDC121Q6ZUS5 278 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 RASAL3Q86YV0 1011 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 RELL1Q8IUW5 271 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PALM2Q8IXS6 379 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 FBF1Q8TES7 1133 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 FAF2Q96CS3 445 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 PAAF1Q9BRP4 392 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 EURLQ9NYK6 297 aa11.07□□□□□ -0.64
CUX1-217ENST00000558836 I3L4J1 428 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 TAF6P49848 677 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ARL4CP56559 192 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 SLC10A2Q12908 348 aaPredicted RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 TRIM32Q13049 653 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 NOMO1Q15155 1222 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 APBB1IPQ7Z5R6 666 aaPredicted RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 PIGZQ86VD9 579 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ANKRD52Q8NB46 1076 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ADAM32Q8TC27 787 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 GAD1Q99259 594 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 TBCBQ99426 244 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 USP29Q9HBJ7 922 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ETNK2Q9NVF9 386 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 DERAQ9Y315 318 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 H0YHG0 523 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 CYB561D2O14569 222 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 APOL1O14791 398 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 TCEA3O75764 348 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ATP5DP30049 168 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 ELK3P41970 407 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 WDR4P57081 412 aaKnown RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 BST2Q10589 180 aaKnown RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 CRHR2Q13324 411 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 SMAD1Q15797 465 aaKnown RBP11.06□□□□□ -0.64
CUX1-217ENST00000558836 BOLA3Q53S33 107 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 DCAF6Q58WW2 860 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 KIAA0319Q5VV43 1072 aa11.06□□□□□ -0.64
CUX1-217ENST00000558836 C17orf99Q6UX52 265 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms