RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 DEKP35659 375 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 VAV2P52735 878 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 DAOAP59103 153 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 RNASE9P60153 205 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 MRPS5P82675 430 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 SLC6A3Q01959 620 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TAF10Q12962 218 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TAF5Q15542 800 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 CCDC85BQ15834 202 aaPredicted RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 EFHC1Q5JVL4 640 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 RARS2Q5T160 578 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 FAM102AQ5T9C2 384 aaPredicted RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 PM20D1Q6GTS8 502 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 OLFML1Q6UWY5 402 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TMC5Q6UXY8 1006 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TMEM184AQ6ZMB5 413 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 ZDHHC17Q8IUH5 632 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 HS6ST3Q8IZP7 471 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 C3orf20Q8ND61 904 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 ARHGEF26Q96DR7 871 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 MCRS1Q96EZ8 462 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TRMT2BQ96GJ1 504 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 PIWIL1Q96J94 861 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 GUCD1Q96NT3 240 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 SLITRK1Q96PX8 696 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 CORO1BQ9BR76 489 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TTLL2Q9BWV7 592 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 APOL5Q9BWW9 433 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 PRKD2Q9BZL6 878 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 ZNF334Q9HCZ1 680 aaPredicted RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 HCFC1R1Q9NWW0 138 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 CLDND1Q9NY35 253 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 WDR35Q9P2L0 1181 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 UXTQ9UBK9 157 aaPredicted RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 INTUQ9ULD6 942 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 PYCARDQ9ULZ3 195 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 SCML2Q9UQR0 700 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 NCANO14594 1321 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 A0A0U1RQJ8 604 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 A0A1W2PQH9 124 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 FAM92AA1XBS5 289 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 NCK2O43639 380 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 ABL1P00519 1130 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 CYP1A2P05177 515 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 PGFP49763 221 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 GSCP56915 257 aaPredicted RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 YWHAZP63104 245 aaKnown RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 MAMLD1Q13495 774 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 HS1BP3Q53T59 392 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 PLEKHA7Q6IQ23 1121 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 ANKRD54Q6NXT1 300 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 DNAJC24Q6P3W2 148 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 HFE2Q6ZVN8 426 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 SCML4Q8N228 414 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 TXLNBQ8N3L3 684 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 FEZF2Q8TBJ5 459 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 ATRIPQ8WXE1 791 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 IRGQQ8WZA9 623 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 SMG7Q92540 1137 aaKnown RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 GOLGA1Q92805 767 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 FAM149B1Q96BN6 582 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 ZNF707Q96C28 371 aaPredicted RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 MYRFLQ96LU7 910 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 SELENOOQ9BVL4 669 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 NUP85Q9BW27 656 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 TMEM121BQ9BXQ6 578 aaPredicted RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 SFXN1Q9H9B4 322 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 PIDD1Q9HB75 910 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 ASAH2Q9NR71 780 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 TLR8Q9NR97 1041 aaKnown RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 METTL5Q9NRN9 209 aaKnown RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 PARVAQ9NVD7 372 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 GMIPQ9P107 970 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 CTTNBP2NLQ9P2B4 639 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 DNMT3BQ9UBC3 853 aaKnown RBP10.08□□□□□ -0.8
CUX1-216ENST00000558469 PPP2R2CQ9Y2T4 447 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 SCINQ9Y6U3 715 aa10.08□□□□□ -0.8
CUX1-216ENST00000558469 DENND4AQ7Z401 1863 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 NUP210Q8TEM1 1887 aaPredicted RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 TCRBV5S1A1TA0A578 114 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 SIGLEC16A6NMB1 481 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 PJA2O43164 708 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 SART1O43290 800 aaKnown RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 HSF2BPO75031 334 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 LTFP02788 710 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 KRT3P12035 628 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 MYL4P12829 197 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 FOSL2P15408 326 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 GABRR2P28476 465 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 RFC1P35251 1148 aaPredicted RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 SCNN1AP37088 669 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 YWHAGP61981 247 aaKnown RBP eCLIP10.07□□□□□ -0.8
CUX1-216ENST00000558469 RPL7AP62424 266 aaKnown RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 DLX2Q07687 328 aaPredicted RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 KIF5AQ12840 1032 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 CTC1Q2NKJ3 1217 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 PPP1R15BQ5SWA1 713 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 LCE2DQ5TA82 110 aaPredicted RBP10.07□□□□□ -0.8
CUX1-216ENST00000558469 BSPRYQ5W0U4 402 aa10.07□□□□□ -0.8
CUX1-216ENST00000558469 BTBD8Q5XKL5 378 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms