RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ALDH2P05091 517 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 CT47B1P0C2W7 299 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-205ENST00000558088 MT3P25713 68 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 THBS4P35443 961 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 IL6STP40189 918 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-205ENST00000558088 YPEL5P62699 121 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 RAB1AP62820 205 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 CFHR3Q02985 330 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 HYAL1Q12794 435 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 SLC13A2Q13183 592 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 MTX1Q13505 466 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 SEC23BQ15437 767 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 FAM110CQ1W6H9 321 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 MANEAQ5SRI9 462 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 CACHD1Q5VU97 1274 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 C18orf65Q6ZTR6 163 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 DAAM2Q86T65 1068 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 HPS3Q969F9 1004 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 PPP1R9BQ96SB3 815 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 ZPBPQ9BS86 351 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 TMEM204Q9BSN7 226 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 TRIM54Q9BYV2 358 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 ASPSCR1Q9BZE9 553 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 MRPL44Q9H9J2 332 aaKnown RBP3.31□□□□□ -1.88
VPS13C-205ENST00000558088 MLXIPQ9HAP2 919 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 TXLNGQ9NUQ3 528 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 GAR1Q9NY12 217 aaKnown RBP3.31□□□□□ -1.88
VPS13C-205ENST00000558088 STAP2Q9UGK3 403 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 ICKQ9UPZ9 632 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-205ENST00000558088 CDY1Q9Y6F8 540 aa3.31□□□□□ -1.88
VPS13C-205ENST00000558088 WASHC2CQ9Y4E1 1318 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 A0A088AWK7 358 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 CLIC1O00299 241 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 FOXN3O00409 490 aaPredicted RBP3.3□□□□□ -1.88
VPS13C-205ENST00000558088 INPPL1O15357 1258 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 KRT86O43790 486 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 CD19P15391 556 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 RHDQ02161 417 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 CTBP1Q13363 440 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 KRT81Q14533 505 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 MFSD13AQ14CX5 517 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 PTCHD3Q3KNS1 767 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 IFIT1BQ5T764 474 aaKnown RBP3.3□□□□□ -1.88
VPS13C-205ENST00000558088 Q6ZTC4 211 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 B4GALNT4Q76KP1 1039 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 KRT78Q8N1N4 520 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 CHMP4CQ96CF2 233 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 VPS50Q96JG6 964 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 SLCO5A1Q9H2Y9 848 aa3.3□□□□□ -1.88
VPS13C-205ENST00000558088 SEMA4BQ9NPR2 832 aaPredicted RBP3.3□□□□□ -1.88
VPS13C-205ENST00000558088 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 GTPBP1O00178 669 aaKnown RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 SPRY2O43597 315 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 UQCRC1P31930 480 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 EVA1CP58658 441 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 TIRAPP58753 221 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 TXNL4AP83876 142 aaKnown RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 B4GALNT1Q00973 533 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 ST3GAL2Q16842 350 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 KRTAP27-1Q3LI81 207 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 ZNF585BQ52M93 769 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 PDXDC1Q6P996 788 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 DENND1CQ8IV53 801 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 C12orf76Q8N812 135 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 PLBD2Q8NHP8 589 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 SMCR8Q8TEV9 937 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 SLC25A28Q96A46 364 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 TRIM5Q9C035 493 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 ZNF518BQ9C0D4 1074 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 A1CFQ9NQ94 594 aaKnown RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 DECR2Q9NUI1 292 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 ARL8BQ9NVJ2 186 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 TMEM45AQ9NWC5 275 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 NKX1-2Q9UD57 310 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-205ENST00000558088 ANKRD6Q9Y2G4 727 aa3.29□□□□□ -1.88
VPS13C-205ENST00000558088 LOC102723971A0A1B0GUV8 181 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 EXOC5O00471 708 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 CD3EAPO15446 510 aaKnown RBP3.28□□□□□ -1.88
VPS13C-205ENST00000558088 CCP110O43303 1012 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ZC3H11AO75152 810 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS13C-205ENST00000558088 HTR1BP28222 390 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ALDH7A1P49419 539 aaKnown RBP3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ARFIP2P53365 341 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 AMPD3Q01432 767 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 SLC14A1Q13336 389 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 PRTGQ2VWP7 1150 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ATAT1Q5SQI0 421 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 SKAP1Q86WV1 359 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 PELI3Q8N2H9 469 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 RBMXL3Q8N7X1 1067 aaKnown RBP3.28□□□□□ -1.88
VPS13C-205ENST00000558088 PNPLA1Q8N8W4 532 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ZBTB8BQ8NAP8 495 aaPredicted RBP3.28□□□□□ -1.88
VPS13C-205ENST00000558088 SPSB4Q96A44 273 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 CTHRC1Q96CG8 243 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 MEIS3Q99687 375 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 TUBB6Q9BUF5 446 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ZCWPW1Q9H0M4 648 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 USP29Q9HBJ7 922 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms