RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 STK4Q13043 487 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 MAP7D1Q3KQU3 841 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 FOXD4L5Q5VV16 416 aaPredicted RBP16.9■□□□□ 0.3
SCFD1-224ENST00000557713 ACOT1Q86TX2 421 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 SLC9A9Q8IVB4 645 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 BBS7Q8IWZ6 715 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 GRAMD1CQ8IYS0 662 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 CRYBG2Q8N1P7 616 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 KCNV2Q8TDN2 545 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 WHAMMQ8TF30 809 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 FOXD4L4Q8WXT5 416 aaPredicted RBP16.9■□□□□ 0.3
SCFD1-224ENST00000557713 PIGKQ92643 395 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 SMARCD1Q96GM5 515 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 SMOQ99835 787 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 SPHK2Q9NRA0 654 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 GMIPQ9P107 970 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 EVLQ9UI08 416 aaPredicted RBP16.9■□□□□ 0.3
SCFD1-224ENST00000557713 SH3BP1Q9Y3L3 701 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 USP24Q9UPU5 2620 aa16.9■□□□□ 0.3
SCFD1-224ENST00000557713 THADAQ6YHU6 1953 aa16.89■□□□□ 0.3
SCFD1-224ENST00000557713 NUP205Q92621 2012 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.89■□□□□ 0.29
SCFD1-224ENST00000557713 MAP3K13O43283 966 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 GREM1O60565 184 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 TULP3O75386 442 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 AP1G2O75843 785 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 BEST1O76090 585 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 ZSCAN22P10073 491 aaPredicted RBP16.89■□□□□ 0.29
SCFD1-224ENST00000557713 DLG4P78352 724 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 SGSM1Q2NKQ1 1148 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 FOXD4L6Q3SYB3 417 aaPredicted RBP16.89■□□□□ 0.29
SCFD1-224ENST00000557713 SPDYCQ5MJ68 293 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 BTBD8Q5XKL5 378 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 FOXD4L3Q6VB84 417 aaPredicted RBP16.89■□□□□ 0.29
SCFD1-224ENST00000557713 SCARA5Q6ZMJ2 495 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 LPCAT2Q7L5N7 544 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 TMEM25Q86YD3 366 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 NAT16Q8N8M0 369 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 KCTD10Q9H3F6 313 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 CSNK1G1Q9HCP0 422 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 TMEM74BQ9NUR3 256 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 SERTAD1Q9UHV2 236 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 HCN2Q9UL51 889 aa16.89■□□□□ 0.29
SCFD1-224ENST00000557713 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 TBC1D3BA6NDS4 549 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 F13A1P00488 732 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 SLFN14P0C7P3 912 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 PDIA4P13667 645 aaKnown RBP16.88■□□□□ 0.29
SCFD1-224ENST00000557713 CSRP1P21291 193 aaKnown RBP16.88■□□□□ 0.29
SCFD1-224ENST00000557713 PTGER3P43115 390 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 ME1P48163 572 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 BYSLQ13895 437 aaKnown RBP16.88■□□□□ 0.29
SCFD1-224ENST00000557713 ZACNQ401N2 412 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 SH3PXD2AQ5TCZ1 1133 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 HTR3DQ70Z44 454 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 TMEFF1Q8IYR6 380 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 KIAA0895Q8NCT3 520 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 SLC2A14Q8TDB8 520 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 HMGB4Q8WW32 186 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 SNX21Q969T3 373 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 SPACA7Q96KW9 195 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 KRT82Q9NSB4 513 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 BCCIPQ9P287 314 aaKnown RBP eCLIP16.88■□□□□ 0.29
SCFD1-224ENST00000557713 DEC1Q9P2X7 70 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 WASF3Q9UPY6 502 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 STARD13Q9Y3M8 1113 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 MYOFQ9NZM1 2061 aa16.88■□□□□ 0.29
SCFD1-224ENST00000557713 TCRBV21S2A2A0A5A6 115 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 PDXKO00764 312 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TRIM24O15164 1050 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TBX18O95935 607 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 RPN1P04843 607 aaKnown RBP16.87■□□□□ 0.29
SCFD1-224ENST00000557713 CEACAM1P13688 526 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 CCDC130P13994 396 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 NDST1P52848 882 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 ORC1Q13415 861 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 PREPLQ4J6C6 727 aaPredicted RBP16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TRIM61Q5EBN2 209 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 ATL3Q6DD88 541 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 SV2AQ7L0J3 742 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 UNC93AQ86WB7 457 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 SYT12Q8IV01 421 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 CEP57L1Q8IYX8 460 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 ZNF513Q8N8E2 541 aaPredicted RBP16.87■□□□□ 0.29
SCFD1-224ENST00000557713 C12orf29Q8N999 325 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TERB1Q8NA31 727 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TMC2Q8TDI7 906 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 TAF4BQ92750 862 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 PAGE5Q96GU1 130 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 KLF16Q9BXK1 252 aaPredicted RBP16.87■□□□□ 0.29
SCFD1-224ENST00000557713 FBXO44Q9H4M3 255 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 HMGXB4Q9UGU5 601 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 RCOR1Q9UKL0 485 aa16.87■□□□□ 0.29
SCFD1-224ENST00000557713 CIZ1Q9ULV3 898 aaPredicted RBP16.87■□□□□ 0.29
SCFD1-224ENST00000557713 IKBKBO14920 756 aa16.86■□□□□ 0.29
SCFD1-224ENST00000557713 ACTN4O43707 911 aaKnown RBP16.86■□□□□ 0.29
SCFD1-224ENST00000557713 TLR5O60602 858 aa16.86■□□□□ 0.29
SCFD1-224ENST00000557713 ASS1P00966 412 aaKnown RBP16.86■□□□□ 0.29
SCFD1-224ENST00000557713 PROS1P07225 676 aa16.86■□□□□ 0.29
SCFD1-224ENST00000557713 IRF1P10914 325 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms