RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 MCL1Q07820 350 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 KCNB1Q14721 858 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 ANO6Q4KMQ2 910 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 MIDNQ504T8 468 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 DENND2CQ68D51 928 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 MEPCEQ7L2J0 689 aaKnown RBP4.92□□□□□ -1.62
SCFD1-217ENST00000555953 MICU3Q86XE3 530 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 TPH2Q8IWU9 490 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 ZNF548Q8NEK5 533 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-217ENST00000555953 SPSB4Q96A44 273 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 PPP1R9BQ96SB3 815 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 A1CFQ9NQ94 594 aaKnown RBP4.92□□□□□ -1.62
SCFD1-217ENST00000555953 STK32BQ9NY57 414 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 MGAT4CQ9UBM8 478 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 ZNF180Q9UJW8 692 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 FER1L4A9Z1Z3 1794 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 H7C4K7 107 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 RGS10O43665 173 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 TMPRSS11DO60235 418 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 TUSC2O75896 110 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 ALPLP05186 524 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 CTSAP10619 480 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 PSG1P11464 419 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 HGFP14210 728 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 SLC7A1P30825 629 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 MCM5P33992 734 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 NANOS2P60321 138 aaKnown RBP4.91□□□□□ -1.62
SCFD1-217ENST00000555953 YPEL5P62699 121 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 TTF1Q15361 905 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-217ENST00000555953 INSCQ1MX18 579 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 ANO7Q6IWH7 933 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 SWSAP1Q6NVH7 229 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 NPNTQ6UXI9 565 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 OVCH2Q7RTZ1 564 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 HS6ST2Q96MM7 605 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 B3GNT5Q9BYG0 378 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 BRINP2Q9C0B6 783 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 POT1Q9NUX5 634 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 USP19O94966 1318 aa4.91□□□□□ -1.62
SCFD1-217ENST00000555953 LOC102723971A0A1B0GUV8 181 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 MBD3L4A6NDZ8 208 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 MBD3L3A6NE82 208 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 AGPSO00116 658 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 AKAP10O43572 662 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 RRP9O43818 475 aaKnown RBP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 TOMM40O96008 361 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 THBS3P49746 956 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 ITGA8P53708 1063 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 CFHR3Q02985 330 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 TMEM63BQ5T3F8 832 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 VSTM1Q6UX27 236 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 C9orf47Q6ZRZ4 202 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 EPM2AIP1Q7L775 607 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 ANKRD13BQ86YJ7 626 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 CHPFQ8IZ52 775 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 EDC3Q96F86 508 aaKnown RBP4.9□□□□□ -1.63
SCFD1-217ENST00000555953 TRIM36Q9NQ86 728 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 ASAP1Q9ULH1 1129 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 PAXBP1Q9Y5B6 917 aa4.9□□□□□ -1.63
SCFD1-217ENST00000555953 TRIM43BA6NCK2 446 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 H3BNX3 289 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 PYCARD-AS1I3L0S3 204 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 EXOC5O00471 708 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 CCP110O43303 1012 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 ME1P48163 572 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 PTDSS1P48651 473 aaKnown RBP4.89□□□□□ -1.63
SCFD1-217ENST00000555953 HTR6P50406 440 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 RAB27AP51159 221 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 RPS13P62277 151 aaKnown RBP4.89□□□□□ -1.63
SCFD1-217ENST00000555953 DEUP1Q05D60 604 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 SLC14A1Q13336 389 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 NPY5RQ15761 445 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 CC2D1BQ5T0F9 858 aaKnown RBP4.89□□□□□ -1.63
SCFD1-217ENST00000555953 KIAA1161Q6NSJ0 714 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 MAEAQ7L5Y9 396 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 METTL25Q8N6Q8 603 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 TRIM43Q96BQ3 446 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-217ENST00000555953 KAZALD1Q96I82 304 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 C22orf23Q9BZE7 217 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 CPNE7Q9UBL6 633 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 RIMKLBQ9ULI2 386 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 NOP58Q9Y2X3 529 aaKnown RBP4.89□□□□□ -1.63
SCFD1-217ENST00000555953 SQORQ9Y6N5 450 aa4.89□□□□□ -1.63
SCFD1-217ENST00000555953 E2F8A0AVK6 867 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 CLIC1O00299 241 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 CRYABP02511 175 aaKnown RBP4.88□□□□□ -1.63
SCFD1-217ENST00000555953 KLRC1P26715 233 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 GATMP50440 423 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 PGDP52209 483 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 SUMO3P55854 103 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-217ENST00000555953 MFSD13AQ14CX5 517 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 ZNF750Q32MQ0 723 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 ARFGAP1Q8N6T3 406 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 ACRBPQ8NEB7 543 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 SUCLG2Q96I99 432 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 ZFYVE19Q96K21 471 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 SACM1LQ9NTJ5 587 aa4.88□□□□□ -1.63
SCFD1-217ENST00000555953 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-217ENST00000555953 HS3ST3B1Q9Y662 390 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms