RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 TMEM131Q92545 1883 aa16.46■□□□□ 0.22
CLSTN3-216ENST00000545663 ENC1O14682 589 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 OGTO15294 1046 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 HOXC11O43248 304 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 CTDNEP1O95476 244 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 OLFM2O95897 454 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 TPMTP51580 245 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 FUT11Q495W5 492 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 FBXL19Q6PCT2 694 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 RUFY3Q7L099 469 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 OSTM1Q86WC4 334 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 GATAD2AQ86YP4 633 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 SPATA2LQ8IUW3 424 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 KIAA1958Q8N8K9 716 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 ENGASEQ8NFI3 743 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 SNX19Q92543 992 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 WBP2Q969T9 261 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 TSPAN18Q96SJ8 248 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 ACBD6Q9BR61 282 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 ANKMY1Q9P2S6 941 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 CPSF3Q9UKF6 684 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 L1RE1Q9UN81 338 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 PCDHGA1Q9Y5H4 931 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 MYLKQ15746 1914 aa16.45■□□□□ 0.22
CLSTN3-216ENST00000545663 E2F8A0AVK6 867 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 TRAK2O60296 914 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 ATP2C2O75185 946 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 RFPL3O75679 317 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 PSMA5P28066 241 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 CCT8P50990 548 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 FOSBP53539 338 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 KIAA1614Q5VZ46 1190 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 GRAMD4Q6IC98 578 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 METTL3Q86U44 580 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 FAM124AQ86V42 546 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 BBS7Q8IWZ6 715 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 TSC1Q92574 1164 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 IGSF8Q969P0 613 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 DNAJC17Q9NVM6 304 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 TBC1D14Q9P2M4 693 aa16.44■□□□□ 0.22
CLSTN3-216ENST00000545663 OAS1P00973 400 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 MBL2P11226 248 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 PLS3P13797 630 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 FDPSP14324 419 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 PFKLP17858 780 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 MUTP22033 750 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 NFATC3Q12968 1075 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 ZNF174Q15697 407 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 CFAP221Q4G0U5 840 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 NUDT18Q6ZVK8 323 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 KCNK18Q7Z418 384 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 CACUL1Q86Y37 369 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 CNDP2Q96KP4 475 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 C17orf75Q9HAS0 396 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 ZSWIM6Q9HCJ5 1215 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 BRMS1Q9HCU9 246 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 TM9SF3Q9HD45 589 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 SPHK2Q9NRA0 654 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 ORC3Q9UBD5 711 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 PCDHB6Q9Y5E3 794 aa16.43■□□□□ 0.22
CLSTN3-216ENST00000545663 A0A0B4J269 797 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 CDC45O75419 566 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 CDKL5O76039 1030 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 LDOC1O95751 146 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 OR52Z1P0C646 297 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 CDC25AP30304 524 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 ACADVLP49748 655 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 ACOT2P49753 483 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 LIG4P49917 911 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 NFKB2Q00653 900 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 SV2CQ496J9 727 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 BROXQ5VW32 411 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 HAUS3Q68CZ6 603 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 CD302Q8IX05 232 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 DIS3L2Q8IYB7 885 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 ZNF248Q8NDW4 579 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 SPATA17Q96L03 361 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 MSTO1Q9BUK6 570 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 C6orf106Q9H6K1 298 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 LRWD1Q9UFC0 647 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 DNM3Q9UQ16 869 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 DERAQ9Y315 318 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 STON1Q9Y6Q2 735 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 TCHHQ07283 1943 aa16.42■□□□□ 0.22
CLSTN3-216ENST00000545663 USP9YO00507 2555 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 TERTO14746 1132 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 BDNFP23560 247 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 MAGEA11P43364 429 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 SMTNP53814 917 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 KYAT1Q16773 422 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 SLC39A4Q6P5W5 647 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 DENND5BQ6ZUT9 1274 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 SCFD1Q8WVM8 642 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 HIC2Q96JB3 615 aa16.41■□□□□ 0.22
CLSTN3-216ENST00000545663 AHCTF1Q8WYP5 2266 aa16.4■□□□□ 0.22
CLSTN3-216ENST00000545663 NPHP3-ACAD11A0A0J9YXS1 232 aa16.4■□□□□ 0.22
CLSTN3-216ENST00000545663 PP2D1A8MPX8 630 aa16.4■□□□□ 0.22
CLSTN3-216ENST00000545663 HNRNPDLO14979 420 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-216ENST00000545663 KLK10O43240 276 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms