RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 TLR5O60602 858 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 KAT7O95251 611 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 PRR29P0C7W0 189 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 ZNF806P0C7X5 589 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 GCLMP48507 274 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 LIMK1P53667 647 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 MAP3K7CLP57077 242 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 ADAM9Q13443 819 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 PLK5Q496M5 336 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 IL31Q6EBC2 164 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 SPOPLQ6IQ16 392 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 TRMT11Q7Z4G4 463 aaKnown RBP13.87□□□□□ -0.19
RTN3-212ENST00000543123 TADA2BQ86TJ2 420 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 FAXDC2Q96IV6 333 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 HNRNPABQ99729 332 aaKnown RBP13.87□□□□□ -0.19
RTN3-212ENST00000543123 SMOQ99835 787 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 GTPBP4Q9BZE4 634 aaKnown RBP13.87□□□□□ -0.19
RTN3-212ENST00000543123 FAM124BQ9H5Z6 455 aaPredicted RBP13.87□□□□□ -0.19
RTN3-212ENST00000543123 CCSER2Q9H7U1 834 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 TMEM8AQ9HCN3 771 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 VPS45Q9NRW7 570 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 HMGXB4Q9UGU5 601 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 LSM7Q9UK45 103 aaKnown RBP13.87□□□□□ -0.19
RTN3-212ENST00000543123 MAPK8IP1Q9UQF2 711 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 ZDHHC9Q9Y397 364 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 PCDHA5Q9Y5H7 936 aa13.87□□□□□ -0.19
RTN3-212ENST00000543123 ATG2BQ96BY7 2078 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 DCDC2BA2VCK2 349 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 SCAMP3O14828 347 aaKnown RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 HOXC11O43248 304 aaPredicted RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 ZNF202O95125 648 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 TRIM49P0CI25 452 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 TRIM49CP0CI26 452 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 EPB41P11171 864 aaKnown RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 ADORA2BP29275 332 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 HOXC13P31276 330 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 GBP1P32455 592 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 MPLP40238 635 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 TNFRSF4P43489 277 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 ORC1Q13415 861 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 GAB4Q2WGN9 574 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 EOGTQ5NDL2 527 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 LY6G5CQ5SRR4 150 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 C1orf220Q5T0J3 134 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 KRT39Q6A163 491 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 RHBDF2Q6PJF5 856 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 C12orf29Q8N999 325 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 KCNV2Q8TDN2 545 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 TAS1R2Q8TE23 839 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 CYFIP2Q96F07 1278 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 ZFRQ96KR1 1074 aaKnown RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 CNOT6LQ96LI5 555 aaKnown RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 CDK5RAP1Q96SZ6 601 aaKnown RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 POLMQ9NP87 494 aaPredicted RBP13.86□□□□□ -0.19
RTN3-212ENST00000543123 SCML2Q9UQR0 700 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 MYO16Q9Y6X6 1858 aa13.86□□□□□ -0.19
RTN3-212ENST00000543123 CETN3O15182 167 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 CD58P19256 250 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 ATP5C1P36542 298 aaKnown RBP13.85□□□□□ -0.19
RTN3-212ENST00000543123 PSEN1P49768 467 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 MXI1P50539 228 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 SLC8A3P57103 927 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 KDSRQ06136 332 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 PPP3CAQ08209 521 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 BYSLQ13895 437 aaKnown RBP13.85□□□□□ -0.19
RTN3-212ENST00000543123 BECN1Q14457 450 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 CRY1Q16526 586 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 PLA2G2CQ5R387 149 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 ANO7Q6IWH7 933 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 KLHDC10Q6PID8 442 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 CLEC20AQ6ZU45 233 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 RASSF3Q86WH2 238 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 ZMIZ2Q8NF64 920 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 WHAMMQ8TF30 809 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 ELMO3Q96BJ8 720 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 TSG101Q99816 390 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 DUSP15Q9H1R2 295 aaPredicted RBP13.85□□□□□ -0.19
RTN3-212ENST00000543123 MMRN2Q9H8L6 949 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 CYLDQ9NQC7 956 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.85□□□□□ -0.191e-6■■■■■ 88.9
RTN3-212ENST00000543123 SPHK2Q9NRA0 654 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 POLR3BQ9NW08 1133 aaPredicted RBP13.85□□□□□ -0.19
RTN3-212ENST00000543123 DEC1Q9P2X7 70 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
RTN3-212ENST00000543123 LAMA1P25391 3075 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 MYH10P35580 1976 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 SPTBN2O15020 2390 aa13.85□□□□□ -0.19
RTN3-212ENST00000543123 A0A0A0MRY4 1105 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 TBC1D3BA6NDS4 549 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 CILPO75339 1184 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 BEST1O76090 585 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 SMC2O95347 1197 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 KLF8O95600 359 aaPredicted RBP13.84□□□□□ -0.19
RTN3-212ENST00000543123 IRF1P10914 325 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 ACO1P21399 889 aaKnown RBP13.84□□□□□ -0.19
RTN3-212ENST00000543123 TIE1P35590 1138 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 SLC6A11P48066 632 aa13.84□□□□□ -0.19
RTN3-212ENST00000543123 CREB5Q02930 508 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms