RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 BBS7Q8IWZ6 715 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 NUP93Q8N1F7 819 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 HDDC3Q8N4P3 179 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 MINDY1Q8N5J2 469 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 TERB1Q8NA31 727 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 KCNV2Q8TDN2 545 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 OVCA2Q8WZ82 227 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 KCNK16Q96T55 309 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 PANK2Q9BZ23 570 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 CCSER2Q9H7U1 834 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 TMEM131Q92545 1883 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 IGHV1OR15-9A0A0B4J2B8 117 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 H0Y626 953 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 ARHGAP33O14559 1287 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 OPHN1O60890 802 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 TRIM16O95361 564 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 FAM163BP0C2L3 166 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 HOXB2P14652 356 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 TXLNAP40222 546 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 STAT6P42226 847 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 WASP42768 502 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 WDR72Q3MJ13 1102 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 C10orf76Q5T2E6 689 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 SNX30Q5VWJ9 437 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 FAM173BQ6P4H8 233 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 SLC36A4Q6YBV0 504 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 CCDC73Q6ZRK6 1079 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 TMEM25Q86YD3 366 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 B3GALNT2Q8NCR0 500 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 PDZD8Q8NEN9 1154 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 SCAMP5Q8TAC9 235 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 FBXO32Q969P5 355 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 DUSP9Q99956 384 aaKnown RBP18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 GZF1Q9H116 711 aaPredicted RBP18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 SPHK2Q9NRA0 654 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 DEC1Q9P2X7 70 aa18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 CHORDC1Q9UHD1 332 aaPredicted RBP18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 TP53BP1Q12888 1972 aaPredicted RBP18.92■□□□□ 0.62
CLSTN3-214ENST00000542663 VPS37CA5D8V6 355 aaPredicted RBP18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 GJB3O75712 270 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 RTN3O95197 1032 aaPredicted RBP18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 NTSR1P30989 418 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 SNRNP35Q16560 246 aaKnown RBP18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 HECTD3Q5T447 861 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 ERICH6BQ5W0A0 696 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 BTBD8Q5XKL5 378 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 EGFLAMQ63HQ2 1017 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 PAQR9Q6ZVX9 377 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 TRMT11Q7Z4G4 463 aaKnown RBP18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 PROSER1Q86XN7 944 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 CAMK1GQ96NX5 476 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 ACOX2Q99424 681 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 CD93Q9NPY3 652 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 DNAAF2Q9NVR5 837 aaKnown RBP18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 IL37Q9NZH6 218 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 SH3BP1Q9Y3L3 701 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 STARD13Q9Y3M8 1113 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 CKAP5Q14008 2032 aa18.91■□□□□ 0.62
CLSTN3-214ENST00000542663 CELSR3Q9NYQ7 3312 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 A8MXQ7 604 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 ZDHHC11BP0C7U3 371 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 DLATP10515 647 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 TNNI1P19237 187 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 NDUFV2P19404 249 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 PGFP49763 221 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 TNNC1P63316 161 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 CEBPZQ03701 1054 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 ANO4Q32M45 955 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 RABEPKQ7Z6M1 372 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 CCDC65Q8IXS2 484 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 RDH13Q8NBN7 331 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 ZNF516Q92618 1163 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 ERLEC1Q96DZ1 483 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 CGRRF1Q99675 332 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 XYLT2Q9H1B5 865 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 KIAA1586Q9HCI6 787 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 CYP8B1Q9UNU6 501 aa18.9■□□□□ 0.62
CLSTN3-214ENST00000542663 A0A1W2PQD8 194 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 FAM92AA1XBS5 289 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 TGFB1I1O43294 461 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 GREM1O60565 184 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 STAU1O95793 577 aaKnown RBP18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 TUBP50607 506 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 SLC5A3P53794 718 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 PSMD6Q15008 389 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 ZNF423Q2M1K9 1284 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 EPM2AIP1Q7L775 607 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 TRIML1Q8N9V2 468 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 IPO4Q8TEX9 1081 aaKnown RBP18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 HSPA12BQ96MM6 686 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 SLC6A17Q9H1V8 727 aa18.89■□□□□ 0.61
CLSTN3-214ENST00000542663 SH3BP5O60239 455 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 IRF1P10914 325 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 MYL6P60660 151 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 CYP24A1Q07973 514 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 PREPLQ4J6C6 727 aaPredicted RBP18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 STXBP4Q6ZWJ1 553 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 FAM35AQ86V20 835 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 PDILTQ8N807 584 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms