RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAM50BQ9Y247 325 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 FAM170AA1A519 330 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 MOSPD3O75425 235 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 TADA3O75528 432 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ABL1P00519 1130 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 FTLP02792 175 aaPredicted RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 CALB1P05937 261 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 GJA1P17302 382 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 TFF2Q03403 129 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 GFPT1Q06210 699 aaPredicted RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 AAK1Q2M2I8 961 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ARHGAP15Q53QZ3 475 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 TJAP1Q5JTD0 557 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 OR6B2Q6IFH4 312 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ALKBH5Q6P6C2 394 aaKnown RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 CCDC170Q8IYT3 715 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ITFG1Q8TB96 612 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 CLEC4CQ8WTT0 213 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 NDRG1Q92597 394 aaKnown RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 VCPIP1Q96JH7 1222 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 PDLIM2Q96JY6 352 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 C11orf70Q9BRQ4 267 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ISCUQ9H1K1 167 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.98■□□□□ 0.475e-7■■■■□ 21.5
LIG1-204ENST00000542460 ZMYM5Q9UJ78 669 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 NAGPAQ9UK23 515 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 A0A1W2PQH9 124 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 YJEFN3A6XGL0 299 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 SOBPA7XYQ1 873 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 E7ENQ6 273 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 DDX6P26196 483 aaKnown RBP eCLIP17.97■□□□□ 0.471e-7■■■■■ 60
LIG1-204ENST00000542460 YWHAGP61981 247 aaKnown RBP eCLIP17.97■□□□□ 0.47
LIG1-204ENST00000542460 CYP4F8P98187 520 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 SLC6A3Q01959 620 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 PTP4A2Q12974 167 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 ZNF268Q14587 947 aaPredicted RBP17.97■□□□□ 0.47
LIG1-204ENST00000542460 TEAD2Q15562 447 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 SMAD2Q15796 467 aaKnown RBP17.97■□□□□ 0.47
LIG1-204ENST00000542460 C2CD6Q53TS8 623 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 EFHC1Q5JVL4 640 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 CCDC122Q5T0U0 273 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 PTCRAQ6ISU1 281 aaPredicted RBP17.97■□□□□ 0.47
LIG1-204ENST00000542460 TOGARAM2Q6ZUX3 1019 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 FAM183BPQ6ZVS7 135 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 MON1BQ7L1V2 547 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 GET4Q7L5D6 327 aaPredicted RBP17.97■□□□□ 0.47
LIG1-204ENST00000542460 BHLHA9Q7RTU4 235 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 SCD5Q86SK9 330 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 XYLT1Q86Y38 959 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 MCOLN2Q8IZK6 566 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 ATXN2LQ8WWM7 1075 aaKnown RBP17.97■□□□□ 0.47
LIG1-204ENST00000542460 GOLGA1Q92805 767 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 NMUR1Q9HB89 426 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 CLIC5Q9NZA1 410 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 WDR35Q9P2L0 1181 aa17.97■□□□□ 0.47
LIG1-204ENST00000542460 MYH10P35580 1976 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 PATJQ8NI35 1801 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 NRG2O14511 850 aaPredicted RBP17.96■□□□□ 0.47
LIG1-204ENST00000542460 GLI1P08151 1106 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 CEBPBP17676 345 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 SCNN1AP37088 669 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 PGFP49763 221 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 BSPRYQ5W0U4 402 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 TXNDC8Q6A555 127 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 OLFML1Q6UWY5 402 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 ZNF276Q8N554 614 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 ING5Q8WYH8 240 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 FGF13Q92913 245 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 TRIM62Q9BVG3 475 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 ABCC13Q9NSE7 274 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 GDE1Q9NZC3 331 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 NENFQ9UMX5 172 aa17.96■□□□□ 0.47
LIG1-204ENST00000542460 BRWD1Q9NSI6 2320 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 LTFP02788 710 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 RALAP11233 206 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 PFKLP17858 780 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 CYLC1P35663 651 aaPredicted RBP17.95■□□□□ 0.46
LIG1-204ENST00000542460 TUBP50607 506 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 GSCP56915 257 aaPredicted RBP17.95■□□□□ 0.46
LIG1-204ENST00000542460 YWHAZP63104 245 aaKnown RBP17.95■□□□□ 0.46
LIG1-204ENST00000542460 HECTD3Q5T447 861 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 GPR158Q5T848 1215 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 BTBD8Q5XKL5 378 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 TMEM139Q8IV31 216 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 FAM149B1Q96BN6 582 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 MCRS1Q96EZ8 462 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 TRIM11Q96F44 468 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 SLITRK6Q9H5Y7 841 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 TASP1Q9H6P5 420 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 TRPC7Q9HCX4 862 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.95■□□□□ 0.46
LIG1-204ENST00000542460 ASNSD1Q9NWL6 643 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 OSER1Q9NX31 292 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 CDH7Q9ULB5 785 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 USTQ9Y2C2 406 aa17.95■□□□□ 0.46
LIG1-204ENST00000542460 ZFP37Q9Y6Q3 630 aaPredicted RBP17.95■□□□□ 0.46
LIG1-204ENST00000542460 RARGP13631 454 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 STXBP5Q5T5C0 1151 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 HFE2Q6ZVN8 426 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 BEND5Q7L4P6 421 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms