RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	PRR23B	Q6ZRT6	265 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	HTR3D	Q70Z44	454 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	CACNA2D4	Q7Z3S7	1137 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PHTF2	Q8N3S3	785 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SEMA4D	Q92854	862 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ACD	Q96AP0	544 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	GTPBP4	Q9BZE4	634 aa	Known RBP	13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	UBXN6	Q9BZV1	441 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TLR8	Q9NR97	1041 aa	Known RBP	13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SMPD4	Q9NXE4	827 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	GMIP	Q9P107	970 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PCDHA5	Q9Y5H7	936 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	USP3	Q9Y6I4	520 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SDK1	Q7Z5N4	2213 aa		13.86	□□□□□ -0.19
SEMA4D-223	ENST00000540475	HOXC11	O43248	304 aa	Predicted RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	STX10	O60499	249 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TLR5	O60602	858 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	RPP40	O75818	363 aa	Known RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	APBB3	O95704	486 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	FAM200B	P0CF97	657 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TRIM21	P19474	475 aa	Known RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SLC6A11	P48066	632 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	KIF11	P52732	1056 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ATXN1	P54253	815 aa	Known RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	IFRD2	Q12894	506 aa	Predicted RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	DMC1	Q14565	340 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	LPAL2	Q16609	132 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	HSF5	Q4G112	596 aa	Predicted RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	GPRIN1	Q7Z2K8	1008 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	DGLUCY	Q7Z3D6	616 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	RASSF3	Q86WH2	238 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ETFBKMT	Q8IXQ9	262 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	FBXL13	Q8NEE6	735 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TTC16	Q8NEE8	873 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PNKP	Q96T60	521 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	KLF16	Q9BXK1	252 aa	Predicted RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	DUSP16	Q9BY84	665 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SEMA4G	Q9NTN9	838 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	FAM49B	Q9NUQ9	324 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	POLR3B	Q9NW08	1133 aa	Predicted RBP	13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	OSER1	Q9NX31	292 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	RAB20	Q9NX57	234 aa		13.85	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ABCA7	Q8IZY2	2146 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	THADA	Q6YHU6	1953 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	AXIN1	O15169	862 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	SLC16A3	O15427	465 aa	Known RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	EPN2	O95208	641 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ADH1C	P00326	375 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ADH5	P11766	374 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TNFRSF4	P43489	277 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	KIR2DL1	P43626	348 aa	Predicted RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PXN	P49023	591 aa	Predicted RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	FKBP3	Q00688	224 aa	Known RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	GAD2	Q05329	585 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	LRRC63	Q05C16	580 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	MESP2	Q0VG99	397 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PLA2G2C	Q5R387	149 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ANKRD40	Q6AI12	368 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	FOXR2	Q6PJQ5	311 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	CCDC186	Q7Z3E2	898 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	C12orf40	Q86WS4	652 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	CCDC150	Q8NCX0	1101 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	KCNV2	Q8TDN2	545 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	WBP2	Q969T9	261 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	RTKN	Q9BST9	563 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	DNAI2	Q9GZS0	605 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	NMUR1	Q9HB89	426 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	MMP17	Q9ULZ9	603 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	USP18	Q9UMW8	372 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	PCDHGA5	Q9Y5G8	931 aa		13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.84	□□□□□ -0.19
SEMA4D-223	ENST00000540475	ANTXRL	A6NF34	631 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PMM2	O15305	246 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	KAT7	O95251	611 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	SMC2	O95347	1197 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	EPB41	P11171	864 aa	Known RBP	13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	ADORA2B	P29275	332 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	ATP5C1	P36542	298 aa	Known RBP	13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	GRIA2	P42262	883 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PSEN1	P49768	467 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	MXI1	P50539	228 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PMS1	P54277	932 aa	Known RBP	13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	RAD23B	P54727	409 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PLK5	Q496M5	336 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	CBWD6	Q4V339	395 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	RAB41	Q5JT25	222 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	CBWD3	Q5JTY5	395 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	CBWD5	Q5RIA9	395 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	LY6G5C	Q5SRR4	150 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	ARHGAP17	Q68EM7	881 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	PRR23C	Q6ZRP0	262 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	CEP68	Q76N32	757 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	KBTBD6	Q86V97	674 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	BBS7	Q8IWZ6	715 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	SLC4A11	Q8NBS3	891 aa		13.83	□□□□□ -0.2
SEMA4D-223	ENST00000540475	NETO1	Q8TDF5	533 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms