RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 GNL1P36915 607 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 ANO4Q32M45 955 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 WDR45BQ5MNZ6 344 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 HS2ST1Q7LGA3 356 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 TMEM25Q86YD3 366 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 MIB1Q86YT6 1006 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 PDZD8Q8NEN9 1154 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 IPO4Q8TEX9 1081 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 ANKRD36BP1Q96IX9 119 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 LRIG1Q96JA1 1093 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 MMS19Q96T76 1030 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 SPHK2Q9NRA0 654 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 INTS13Q9NVM9 706 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 DKK4Q9UBT3 224 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 PCOLCE2Q9UKZ9 415 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 SH3BP1Q9Y3L3 701 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 PCDHB13Q9Y5F0 798 aa12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 FLNBO75369 2602 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-209ENST00000539982 TRIM24O15164 1050 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 COCHO43405 550 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 TNNC2P02585 160 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 FAM163BP0C2L3 166 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 GAP43P17677 238 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 MAOBP27338 520 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 YWHAQP27348 245 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 GRIN1Q05586 938 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 GRIK2Q13002 908 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 DUOXA2Q1HG44 320 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 MDH1BQ5I0G3 518 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 HECTD3Q5T447 861 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 TMPRSS7Q7RTY8 843 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 BBS7Q8IWZ6 715 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 CHPFQ8IZ52 775 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 SYCP3Q8IZU3 236 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 NUP93Q8N1F7 819 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 GLIS3Q8NEA6 775 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 OR5B17Q8NGF7 314 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 SETD7Q8WTS6 366 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 OVCA2Q8WZ82 227 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 ZFRQ96KR1 1074 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 ACOX2Q99424 681 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 GABRG3Q99928 467 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 CBWD1Q9BRT8 395 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 SNX25Q9H3E2 840 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 PCIF1Q9H4Z3 704 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 TBC1D7Q9P0N9 293 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 CHORDC1Q9UHD1 332 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 HELZ2Q9BYK8 2649 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 APC2O95996 2303 aa12.36□□□□□ -0.43
CLSTN3-209ENST00000539982 A0A1B0GTW7 788 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 RTN3O95197 1032 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 GCNT3O95395 438 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 PTPN1P18031 435 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 CACNA2D1P54289 1103 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 IFRD2Q12894 506 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 SURF1Q15526 300 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 SNX30Q5VWJ9 437 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 EGFLAMQ63HQ2 1017 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 GRAMD4Q6IC98 578 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 GPD1LQ8N335 351 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 SPRYD3Q8NCJ5 442 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 OR6B3Q8NGW1 331 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 NOC3LQ8WTT2 800 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 DNASE2BQ8WZ79 361 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 DNAJC19Q96DA6 116 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 MRGPRX1Q96LB2 322 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 MRPL45Q9BRJ2 306 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 ELOVL4Q9GZR5 314 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 TMEM30AQ9NV96 361 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 NFE2L3Q9Y4A8 694 aa12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 URB1O60287 2271 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-209ENST00000539982 PTPRBP23467 1997 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ZNF233A6NK53 670 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 H3BQV1 296 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 GFRA2O00451 464 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 KIAA0391O15091 583 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 TACC1O75410 805 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ZIC2O95409 532 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 BMP15O95972 392 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ZNF883P0CG24 379 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 CD6P30203 668 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 TUBP50607 506 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 CASP5P51878 434 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ALCAMQ13740 583 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 DBX2Q6ZNG2 339 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 METTL3Q86U44 580 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 SCFD1Q8WVM8 642 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 FBXO32Q969P5 355 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ERLEC1Q96DZ1 483 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 XPO6Q96QU8 1125 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 B3GNT5Q9BYG0 378 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 ZNF518BQ9C0D4 1074 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 SLC6A17Q9H1V8 727 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 CD93Q9NPY3 652 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 OLFML3Q9NRN5 406 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 DNAJC17Q9NVM6 304 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 STK17AQ9UEE5 414 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 NME7Q9Y5B8 376 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 CELSR3Q9NYQ7 3312 aa12.34□□□□□ -0.43
CLSTN3-209ENST00000539982 PTPRJQ12913 1337 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms