RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CCDC14Q49A88 953 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 TTC31Q49AM3 519 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 LACTB2Q53H82 288 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 ANKRD20A8PQ5CZ79 823 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 VSTM1Q6UX27 236 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 CYP4V2Q6ZWL3 525 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 LIMS2Q7Z4I7 341 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 TRABD2AQ86V40 505 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 RASAL3Q86YV0 1011 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 PALM2Q8IXS6 379 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SRRM1Q8IYB3 904 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 ADGRF2Q8IZF7 708 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 TMEM86AQ8N2M4 240 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 C12orf29Q8N999 325 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 MDM1Q8TC05 714 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 MAML1Q92585 1016 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ZMAT2Q96NC0 199 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 PEBP4Q96S96 227 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 CYTH2Q99418 400 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 PRMT1Q99873 361 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 PTPN18Q99952 460 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 MTG1Q9BT17 334 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 SNRNP25Q9BV90 132 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 TRIM62Q9BVG3 475 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 RABEP2Q9H5N1 569 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ACSS3Q9H6R3 686 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SPC25Q9HBM1 224 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ZFYVE28Q9HCC9 887 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 PCDH18Q9HCL0 1135 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 CHST12Q9NRB3 414 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 FAM49BQ9NUQ9 324 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 DNAJC17Q9NVM6 304 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP28-206ENST00000538224 GTF2IRD1Q9UHL9 959 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 CPA4Q9UI42 421 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 XPO7Q9UIA9 1087 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 STAP1Q9ULZ2 295 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 NAALADL1Q9UQQ1 740 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 TRPV2Q9Y5S1 764 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 IKBKGQ9Y6K9 419 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 FRMPD3Q5JV73 1810 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 IQANK1A0A1B0GTG1 560 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 H3BRJ5 948 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 TNPO2O14787 897 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 TM9SF1O15321 606 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 PAPSS1O43252 624 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 TREHO43280 583 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 ADCY6O43306 1168 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 CD48P09326 243 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 ZSCAN5DPP0CG00 497 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 ETS1P14921 441 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 NPR3P17342 541 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 TPSB2P20231 275 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 ARL4AP40617 200 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 MAGEA6P43360 314 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 IFNAR2P48551 515 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 LHX1P48742 406 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 RAB27AP51159 221 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 MRPS6P82932 125 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 ATP11AP98196 1134 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 CDK16Q00536 496 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 PURAQ00577 322 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 ACTN3Q08043 901 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 TPSAB1Q15661 275 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 SEPT7Q16181 437 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 QPCTQ16769 361 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 C15orf59Q2T9L4 293 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 UBXN11Q5T124 520 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 UBAP2Q5T6F2 1119 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 TWF2Q6IBS0 349 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 PMF1Q6P1K2 205 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 SCYL2Q6P3W7 929 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 C17orf99Q6UX52 265 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 RGS9BPQ6ZS82 235 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 PDZD4Q76G19 769 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 PIGWQ7Z7B1 504 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 LRRC34Q8IZ02 419 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 VPS52Q8N1B4 723 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 MICALL1Q8N3F8 863 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 PLD5Q8N7P1 536 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 FAM71DQ8N9W8 422 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 GLIS1Q8NBF1 620 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 B3GALNT2Q8NCR0 500 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 MCUQ8NE86 351 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 FBXO36Q8NEA4 188 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 KBTBD7Q8WVZ9 684 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 KCTD13Q8WZ19 329 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 CENPIQ92674 756 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 C18orf25Q96B23 403 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 QKIQ96PU8 341 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP28-206ENST00000538224 TGS1Q96RS0 853 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 HNRNPABQ99729 332 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 C11orf84Q9BUA3 381 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 APOL6Q9BWW8 343 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 TRABDQ9H4I3 376 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 LRRC4CQ9HCJ2 640 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 XAB2Q9HCS7 855 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 PNPLA8Q9NP80 782 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 RRN3Q9NYV6 651 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 CTNNAL1Q9UBT7 734 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms