RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 EZH1Q92800 747 aaPredicted RBP13.88□□□□□ -0.19
RTN3-207ENST00000536011 NIF3L1Q9GZT8 377 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 ARRDC1-AS1Q9H2J1 176 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 PNPLA8Q9NP80 782 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 ARHGEF4Q9NR80 690 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 FAM49BQ9NUQ9 324 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 RMND1Q9NWS8 449 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 GMIPQ9P107 970 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 CHORDC1Q9UHD1 332 aaPredicted RBP13.88□□□□□ -0.19
RTN3-207ENST00000536011 MMP17Q9ULZ9 603 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 RALGAPA1Q6GYQ0 2036 aa13.88□□□□□ -0.19
RTN3-207ENST00000536011 KIAA1549LQ6ZVL6 1849 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 K7EQS6 105 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 TLR5O60602 858 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 KAT7O95251 611 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 ZNF806P0C7X5 589 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 GCLMP48507 274 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 LIMK1P53667 647 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 MAP3K7CLP57077 242 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 ADAM9Q13443 819 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 PLK5Q496M5 336 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 IL31Q6EBC2 164 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 SPOPLQ6IQ16 392 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 TRMT11Q7Z4G4 463 aaKnown RBP13.87□□□□□ -0.19
RTN3-207ENST00000536011 TADA2BQ86TJ2 420 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 FAXDC2Q96IV6 333 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 HNRNPABQ99729 332 aaKnown RBP13.87□□□□□ -0.19
RTN3-207ENST00000536011 SMOQ99835 787 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 GTPBP4Q9BZE4 634 aaKnown RBP13.87□□□□□ -0.19
RTN3-207ENST00000536011 FAM124BQ9H5Z6 455 aaPredicted RBP13.87□□□□□ -0.19
RTN3-207ENST00000536011 CCSER2Q9H7U1 834 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 TMEM8AQ9HCN3 771 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 VPS45Q9NRW7 570 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 HMGXB4Q9UGU5 601 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 LSM7Q9UK45 103 aaKnown RBP13.87□□□□□ -0.19
RTN3-207ENST00000536011 MAPK8IP1Q9UQF2 711 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 ZDHHC9Q9Y397 364 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 PCDHA5Q9Y5H7 936 aa13.87□□□□□ -0.19
RTN3-207ENST00000536011 ATG2BQ96BY7 2078 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 DCDC2BA2VCK2 349 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 GOLGA6L4A6NEF3 574 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 SCAMP3O14828 347 aaKnown RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 HOXC11O43248 304 aaPredicted RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 ZNF202O95125 648 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 TRIM49P0CI25 452 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 TRIM49CP0CI26 452 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 EPB41P11171 864 aaKnown RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 ADORA2BP29275 332 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 HOXC13P31276 330 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 GBP1P32455 592 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 MPLP40238 635 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 TNFRSF4P43489 277 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 ORC1Q13415 861 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 GAB4Q2WGN9 574 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 EOGTQ5NDL2 527 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 LY6G5CQ5SRR4 150 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 C1orf220Q5T0J3 134 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 KRT39Q6A163 491 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 RHBDF2Q6PJF5 856 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 C12orf29Q8N999 325 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 KCNV2Q8TDN2 545 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 TAS1R2Q8TE23 839 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 SPOCK2Q92563 424 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 CYFIP2Q96F07 1278 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 ZFRQ96KR1 1074 aaKnown RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 CNOT6LQ96LI5 555 aaKnown RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 CDK5RAP1Q96SZ6 601 aaKnown RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 POLMQ9NP87 494 aaPredicted RBP13.86□□□□□ -0.19
RTN3-207ENST00000536011 SCML2Q9UQR0 700 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 MYO16Q9Y6X6 1858 aa13.86□□□□□ -0.19
RTN3-207ENST00000536011 CETN3O15182 167 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 CD58P19256 250 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 ATP5C1P36542 298 aaKnown RBP13.85□□□□□ -0.19
RTN3-207ENST00000536011 PSEN1P49768 467 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 MXI1P50539 228 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 SLC8A3P57103 927 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 KDSRQ06136 332 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 PPP3CAQ08209 521 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 BYSLQ13895 437 aaKnown RBP13.85□□□□□ -0.19
RTN3-207ENST00000536011 BECN1Q14457 450 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 CRY1Q16526 586 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 PLA2G2CQ5R387 149 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 ANO7Q6IWH7 933 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 KLHDC10Q6PID8 442 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 CLEC20AQ6ZU45 233 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 RASSF3Q86WH2 238 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 ZMIZ2Q8NF64 920 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 WHAMMQ8TF30 809 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 ELMO3Q96BJ8 720 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 TSG101Q99816 390 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 DUSP15Q9H1R2 295 aaPredicted RBP13.85□□□□□ -0.19
RTN3-207ENST00000536011 MMRN2Q9H8L6 949 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 CYLDQ9NQC7 956 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.85□□□□□ -0.191e-6■■■■■ 88.9
RTN3-207ENST00000536011 SPHK2Q9NRA0 654 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 POLR3BQ9NW08 1133 aaPredicted RBP13.85□□□□□ -0.19
RTN3-207ENST00000536011 DEC1Q9P2X7 70 aa13.85□□□□□ -0.19
RTN3-207ENST00000536011 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
RTN3-207ENST00000536011 LAMA1P25391 3075 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms