RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, human

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP48-215	ENST00000534705	A1CF	Q9NQ94	594 aa	Known RBP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	XPNPEP3	Q9NQH7	507 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	ANKRD50	Q9ULJ7	1429 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	NDRG4	Q9ULP0	352 aa	Known RBP	4.25	□□□□□ -1.73
USP48-215	ENST00000534705	TPCN1	Q9ULQ1	816 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	SSX2IP	Q9Y2D8	614 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	SLIT1	O75093	1534 aa		4.25	□□□□□ -1.73
USP48-215	ENST00000534705	CLTCL1	P53675	1640 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	NRXN3	Q9Y4C0	1643 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ARHGAP23	Q9P227	1491 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.24	□□□□□ -1.73
USP48-215	ENST00000534705	PTPRT	O14522	1441 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	NOS1	P29475	1434 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	PPM1D	O15297	605 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CCP110	O43303	1012 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	MGEA5	O60502	916 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	TJP3	O95049	919 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CELA2A	P08217	269 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ELFN1	P0C7U0	828 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	MYF5	P13349	255 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	BRAF	P15056	766 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	RHCE	P18577	417 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	GPD1	P21695	349 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	DRD4	P21917	467 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	KCNA3	P22001	575 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	RHD	Q02161	417 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	GALE	Q14376	348 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CNGA2	Q16280	664 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	LCE1E	Q5T753	118 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CRELD2	Q6UXH1	353 aa	Predicted RBP	4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CCDC149	Q6ZUS6	474 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ZNF804A	Q7Z570	1209 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	MICU3	Q86XE3	530 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	COL23A1	Q86Y22	540 aa	Predicted RBP	4.24	□□□□□ -1.73
USP48-215	ENST00000534705	SLC15A3	Q8IY34	581 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	FAM156A	Q8NDB6	213 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	TBC1D5	Q92609	795 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	TTC17	Q96AE7	1141 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ZBTB9	Q96C00	473 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	C8orf48	Q96LL4	319 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	MS4A7	Q9GZW8	240 aa	Predicted RBP	4.24	□□□□□ -1.73
USP48-215	ENST00000534705	CXorf36	Q9H7Y0	433 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	RRP7BP	Q9NSQ0	103 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ZSCAN32	Q9NX65	697 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	SERTAD3	Q9UJW9	196 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	ADGRB3	O60242	1522 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	TNR	Q92752	1358 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	KAT6A	Q92794	2004 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	MED14	O60244	1454 aa		4.24	□□□□□ -1.73
USP48-215	ENST00000534705	RPRD2	Q5VT52	1461 aa	Known RBP	4.24	□□□□□ -1.73
USP48-215	ENST00000534705	NAIP	Q13075	1403 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	FOXN3	O00409	490 aa	Predicted RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	TRIM38	O00635	465 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	CSF1R	P07333	972 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	IL6R	P08887	468 aa	Predicted RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	NR2F6	P10588	404 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	KRT17	Q04695	432 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	SEMA5A	Q13591	1074 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	HLTF	Q14527	1009 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	LLGL1	Q15334	1064 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	INSC	Q1MX18	579 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	FAM153C	Q494X1	144 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	KLHL22	Q53GT1	634 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	AARS2	Q5JTZ9	985 aa	Known RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	MTHFD1L	Q6UB35	978 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	MAVS	Q7Z434	540 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	C14orf80	Q86SX3	495 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	KRT78	Q8N1N4	520 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	RP9	Q8TA86	221 aa	Known RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	SOCS4	Q8WXH5	440 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	SPSB4	Q96A44	273 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	FCRL4	Q96PJ5	515 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	HAPLN3	Q96S86	360 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	ADGRE3	Q9BY15	652 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	BHMT2	Q9H2M3	363 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	DHX36	Q9H2U1	1008 aa	Known RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	GLOD4	Q9HC38	313 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	ARHGEF3	Q9NR81	526 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	TRMT13	Q9NUP7	481 aa	Known RBP	4.23	□□□□□ -1.73
USP48-215	ENST00000534705	ASB6	Q9NWX5	421 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	STK32B	Q9NY57	414 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	DKK3	Q9UBP4	350 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	GABRQ	Q9UN88	632 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	WNT6	Q9Y6F9	365 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	ALK	Q9UM73	1620 aa		4.23	□□□□□ -1.73
USP48-215	ENST00000534705	USP19	O94966	1318 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	IGKV2-30	P06310	120 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	PEX2	P28328	305 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	ALDH9A1	P49189	494 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	CCT8	P50990	548 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	SUMO3	P55854	103 aa	Predicted RBP	4.22	□□□□□ -1.73
USP48-215	ENST00000534705	EIF2B5	Q13144	721 aa	Known RBP	4.22	□□□□□ -1.73
USP48-215	ENST00000534705	KIAA0753	Q2KHM9	967 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	ZIK1	Q3SY52	487 aa	Predicted RBP	4.22	□□□□□ -1.73
USP48-215	ENST00000534705	PLA1A	Q53H76	456 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	CERCAM	Q5T4B2	595 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	TSTD2	Q5T7W7	516 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	DCAF12L1	Q5VU92	463 aa		4.22	□□□□□ -1.73
USP48-215	ENST00000534705	WDR75	Q8IWA0	830 aa	Known RBP	4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms