RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 YWHAZP63104 245 aaKnown RBP20.05■□□□□ 0.8
VPS28-213ENST00000530983 CDK16Q00536 496 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 CBLBQ13191 982 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 FAM47CQ5HY64 1035 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 WDR78Q5VTH9 848 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 C1orf228Q6PIY5 440 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 C4orf50Q6ZRC1 276 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 CDHR3Q6ZTQ4 885 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 EXOC8Q8IYI6 725 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 RXFP2Q8WXD0 754 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 BTBD10Q9BSF8 475 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 RAB6BQ9NRW1 208 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 TTLL3Q9Y4R7 772 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 A6NHS1 94 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 LINGO3P0C6S8 592 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 SERPINB4P48594 390 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 CLCN3P51790 818 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 INHBEP58166 350 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 TFDP2Q14188 446 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 MAP1SQ66K74 1059 aaPredicted RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 PLPPR4Q7Z2D5 763 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 SLC26A11Q86WA9 606 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.04■□□□□ 0.87e-9■□□□□ 10.3
VPS28-213ENST00000530983 CFAP36Q96G28 342 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 RNF157Q96PX1 679 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 MTO1Q9Y2Z2 717 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 C2orf71A6NGG8 1288 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 EIF4E1BA6NMX2 242 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 ENO4A6NNW6 628 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 NOP56O00567 594 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 IL1BP01584 269 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 PDGFRAP16234 1089 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 CYP3A5P20815 502 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 PTDSS1P48651 473 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 CDO1Q16878 200 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 DPH6Q7L8W6 267 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 PLD5Q8N7P1 536 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 TRPM4Q8TD43 1214 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 FBXO41Q8TF61 875 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 HEXIM2Q96MH2 286 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 SRPK1Q96SB4 655 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 SPATC1LQ9H0A9 340 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 PLAC1Q9HBJ0 212 aa20.04■□□□□ 0.8
VPS28-213ENST00000530983 SPATS2LQ9NUQ6 558 aaKnown RBP20.04■□□□□ 0.8
VPS28-213ENST00000530983 FZD9O00144 591 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 SOCS7O14512 581 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 STAG3L1P0CL83 205 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 VDRP11473 427 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 IL4RP24394 825 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 CELF3Q5SZQ8 465 aaKnown RBP20.03■□□□□ 0.8
VPS28-213ENST00000530983 DSTYKQ6XUX3 929 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 FAM183BPQ6ZVS7 135 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.03■□□□□ 0.86e-7■■■■■ 139.2
VPS28-213ENST00000530983 RTP4Q96DX8 246 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 POPDC2Q9HBU9 364 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 PAK5Q9P286 719 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 CXorf49A8MYA2 514 aaPredicted RBP20.03■□□□□ 0.8
VPS28-213ENST00000530983 TRIM49D1C9J1S8 452 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 E5RJQ4 531 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 KCNN4O15554 427 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 GRAP2O75791 330 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 LUC7L3O95232 432 aaKnown RBP20.03■□□□□ 0.8
VPS28-213ENST00000530983 NEFHP12036 1026 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 KHDC1Q4VXA5 237 aaKnown RBP20.03■□□□□ 0.8
VPS28-213ENST00000530983 TTC39BQ5VTQ0 682 aaPredicted RBP20.03■□□□□ 0.8
VPS28-213ENST00000530983 EFCAB12Q6NXP0 572 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 TTC7BQ86TV6 843 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 NSL1Q96IY1 281 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 TUBB6Q9BUF5 446 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 DCLRE1BQ9H816 532 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 VRTNQ9H8Y1 702 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 CYP3A43Q9HB55 503 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 GGA3Q9NZ52 723 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 LTBP3Q9NS15 1303 aa20.03■□□□□ 0.8
VPS28-213ENST00000530983 KLF11O14901 512 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 GSC2O15499 205 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 PRPSAP2O60256 369 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 CSDE1O75534 798 aaKnown RBP20.02■□□□□ 0.8
VPS28-213ENST00000530983 FAXCQ5TGI0 409 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 OR6B2Q6IFH4 312 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 CAND1Q86VP6 1230 aaKnown RBP20.02■□□□□ 0.8
VPS28-213ENST00000530983 PPM1NQ8N819 430 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.02■□□□□ 0.8
VPS28-213ENST00000530983 YIPF3Q9GZM5 350 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 MCM3APO60318 1980 aa20.02■□□□□ 0.8
VPS28-213ENST00000530983 COPEO14579 308 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 UPP2O95045 317 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 MYL2P10916 166 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 RBL1P28749 1068 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 ATICP31939 592 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 ZBTB16Q05516 673 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 DEFB132Q7Z7B7 95 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 CTAGE3PQ8IX95 158 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 PQLC3Q8N755 202 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 ZFATQ9P243 1243 aa20.02■□□□□ 0.79
VPS28-213ENST00000530983 ZC3H7BQ9UGR2 993 aaKnown RBP20.02■□□□□ 0.79
VPS28-213ENST00000530983 FAM237BA0A1B0GVD1 139 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 KRT81Q14533 505 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 KRT72Q14CN4 511 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 CCDC14Q49A88 953 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms