RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 URODP06132 367 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 HAPLN1P10915 354 aaPredicted RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 MARCKSL1P49006 195 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 RGS19P49795 217 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 ATP11AP98196 1134 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 C2orf54Q08AI8 447 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 SND1Q7KZF4 910 aaKnown RBP eCLIP16.72■□□□□ 0.27
NUP54-214ENST00000514307 MON1AQ86VX9 555 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 CPNE8Q86YQ8 564 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 PSTKQ8IV42 348 aaKnown RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 HERC6Q8IVU3 1022 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 RNF168Q8IYW5 571 aaPredicted RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 CLEC4CQ8WTT0 213 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 BCL7CQ8WUZ0 217 aaPredicted RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 RUBCNQ92622 972 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 AP1M1Q9BXS5 423 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 OSBPL8Q9BZF1 889 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 SLITRK6Q9H5Y7 841 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 ZWILCHQ9H900 591 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 MRPL17Q9NRX2 175 aaKnown RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 ABCC13Q9NSE7 274 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 ARGLU1Q9NWB6 273 aaPredicted RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.72■□□□□ 0.27
NUP54-214ENST00000514307 RWDD3Q9Y3V2 267 aa16.72■□□□□ 0.27
NUP54-214ENST00000514307 V9GYY5 206 aaPredicted RBP16.72■□□□□ 0.27
NUP54-214ENST00000514307 TNFRSF10BO14763 440 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 ATP2A2P16615 1042 aaKnown RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 KDELR1P24390 212 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 CHRNA3P32297 505 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 OR1D2P34982 312 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 PTPN7P35236 360 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 GJC1P36383 396 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 CACNA2D1P54289 1103 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 TFDP3Q5H9I0 405 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 ERMARDQ5T6L9 678 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 BSPRYQ5W0U4 402 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 BTBD8Q5XKL5 378 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 PRSS55Q6UWB4 352 aaPredicted RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 TMEM173Q86WV6 379 aaPredicted RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 ARFGAP1Q8N6T3 406 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 ATAD1Q8NBU5 361 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 NOA1Q8NC60 698 aaKnown RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 LRRN4CLQ8ND94 238 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 ZNF461Q8TAF7 563 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 NT5C3BQ969T7 300 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 RNF25Q96BH1 459 aaPredicted RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 B3GALT6Q96L58 329 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 KRT12Q99456 494 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 RHOBTB2Q9BYZ6 727 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 PRDM16Q9HAZ2 1276 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 RBM12Q9NTZ6 932 aaKnown RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 SMARCAL1Q9NZC9 954 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 AFF4Q9UHB7 1163 aaKnown RBP16.71■□□□□ 0.27
NUP54-214ENST00000514307 CDY1Q9Y6F8 540 aa16.71■□□□□ 0.27
NUP54-214ENST00000514307 TDRD15B5MCY1 1934 aaKnown RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 TANC1Q9C0D5 1861 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 LRRD1A4D1F6 860 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 YJEFN3A6XGL0 299 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 E7ENQ6 273 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 TLL1O43897 1013 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 RHOXF2BP0C7M4 288 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 RARAP10276 462 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 NCAM1P13591 858 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 ELF1P32519 619 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 PSEN1P49768 467 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 SULT1E1P49888 294 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 AIF1P55008 147 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 SLC25A11Q02978 314 aaKnown RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 LMNB2Q03252 620 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 DDR2Q16832 855 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 CDO1Q16878 200 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 C15orf59Q2T9L4 293 aaPredicted RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 ARL13BQ3SXY8 428 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 MGAT5BQ3V5L5 792 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 C8orf74Q6P047 294 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 SPOCD1Q6ZMY3 1216 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 RNF19BQ6ZMZ0 732 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 TMCO2Q7Z6W1 182 aaPredicted RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 VSIG1Q86XK7 387 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 KLHL7Q8IXQ5 586 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 VPS52Q8N1B4 723 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 TTC13Q8NBP0 860 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 RNF139Q8WU17 664 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 CLP1Q92989 425 aaKnown RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 MAGOHBQ96A72 148 aaKnown RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 PIWIL1Q96J94 861 aaKnown RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 PGLYRP2Q96PD5 576 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 SLITRK1Q96PX8 696 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 NPY6RQ99463 290 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 RHOXF2Q9BQY4 288 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 C11orf84Q9BUA3 381 aaPredicted RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 FRMD8P1Q9BZ68 369 aaPredicted RBP16.7■□□□□ 0.26
NUP54-214ENST00000514307 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.7■□□□□ 0.26
NUP54-214ENST00000514307 FNIP2Q9P278 1114 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 SCML2Q9UQR0 700 aa16.7■□□□□ 0.26
NUP54-214ENST00000514307 MTMR11A4FU01 709 aa16.69■□□□□ 0.26
NUP54-214ENST00000514307 M0QYT0 321 aa16.69■□□□□ 0.26
NUP54-214ENST00000514307 ERLIN1O75477 346 aa16.69■□□□□ 0.26
NUP54-214ENST00000514307 FGF18O76093 207 aa16.69■□□□□ 0.26
NUP54-214ENST00000514307 RALAP11233 206 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms