RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TLR8Q9NR97 1041 aaKnown RBP31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 FAM50BQ9Y247 325 aa31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 NUP210Q8TEM1 1887 aaPredicted RBP31.11■■■□□ 2.57
LIMCH1-211ENST00000509638 A0A1W2PQH9 124 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 SSU72P8A0A1W2PR75 194 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 TMCO5BA8MYB1 307 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 ZDHHC11BP0C7U3 371 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 SP100P23497 879 aaPredicted RBP31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 MAPK8IP2Q13387 824 aaPredicted RBP31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 ARHGAP15Q53QZ3 475 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 FAM183BPQ6ZVS7 135 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 FGF13Q92913 245 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 NMUR1Q9HB89 426 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 NAGPAQ9UK23 515 aa31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 HELZP42694 1942 aaKnown RBP31.1■■■□□ 2.57
LIMCH1-211ENST00000509638 A0A087X0T9 212 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 YJEFN3A6XGL0 299 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 E7ENQ6 273 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 FAM228BP0C875 321 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 IL9P15248 144 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 MRPS5P82675 430 aaKnown RBP31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 SCD5Q86SK9 330 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 MON1AQ86VX9 555 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 PHF13Q86YI8 300 aaPredicted RBP31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 C18orf8Q96DM3 657 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 PIWIL1Q96J94 861 aaKnown RBP31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 NHEJ1Q9H9Q4 299 aaPredicted RBP31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 TRPC7Q9HCX4 862 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 GABRB2P47870 512 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 GSDMDP57764 484 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 GPR158Q5T848 1215 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 TXNDC8Q6A555 127 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 ACAD10Q6JQN1 1059 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 OLFML1Q6UWY5 402 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 MON1BQ7L1V2 547 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 IRGQQ8WZA9 623 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 OSER1Q9NX31 292 aa31.09■■■□□ 2.57
LIMCH1-211ENST00000509638 C2orf78A6NCI8 922 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 SART1O43290 800 aaKnown RBP31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 YWHAGP61981 247 aaKnown RBP eCLIP31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 OR6B2Q6IFH4 312 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 XYLT1Q86Y38 959 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 ARHGAP18Q8N392 663 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 CCDC42Q96M95 316 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 MYADMQ96S97 322 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 ADAM22Q9P0K1 906 aa31.08■■■□□ 2.57
LIMCH1-211ENST00000509638 GZMAP12544 262 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 FECHP22830 423 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 GBP2P32456 591 aaPredicted RBP31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 PSEN1P49768 467 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 GFPT1Q06210 699 aaPredicted RBP31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 PTP4A2Q12974 167 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 ASTE1Q2TB18 679 aaPredicted RBP31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 SNX30Q5VWJ9 437 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 PPP1R2P3Q6NXS1 205 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 HFE2Q6ZVN8 426 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 DNAAF5Q86Y56 855 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 PHF7Q9BWX1 381 aaPredicted RBP31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 CDH7Q9ULB5 785 aa31.07■■■□□ 2.56
LIMCH1-211ENST00000509638 VCANP13611 3396 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 AKR1B10O60218 316 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 DDX6P26196 483 aaKnown RBP eCLIP31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 C1QBPQ07021 282 aaKnown RBP31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 SLC18A3Q16572 532 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 POTEHQ6S545 545 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 TOGARAM2Q6ZUX3 1019 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 MAB21L3Q8N8X9 362 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 FAM149B1Q96BN6 582 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 CCSER2Q9H7U1 834 aa31.06■■■□□ 2.56
LIMCH1-211ENST00000509638 LTFP02788 710 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 CALB1P05937 261 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 TUBP50607 506 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 OTOP3Q7RTS5 596 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 ZDHHC17Q8IUH5 632 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 ATXN2LQ8WWM7 1075 aaKnown RBP31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 GOLGA1Q92805 767 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 MCRS1Q96EZ8 462 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 TASP1Q9H6P5 420 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 MTPAPQ9NVV4 582 aaKnown RBP eCLIP31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 GDE1Q9NZC3 331 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 STRIP2Q9ULQ0 834 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 TLR5O60602 858 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 RTN2O75298 545 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 OAS1P00973 400 aaKnown RBP31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 FAM102AQ5T9C2 384 aaPredicted RBP31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 BSPRYQ5W0U4 402 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 MCOLN2Q8IZK6 566 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 ZSWIM3Q96MP5 696 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 SPTLC3Q9NUV7 552 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 CLIC5Q9NZA1 410 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 NENFQ9UMX5 172 aa31.05■■■□□ 2.56
LIMCH1-211ENST00000509638 GOLGA8SH3BPF8 625 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 FTLP02792 175 aaPredicted RBP31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 RARGP13631 454 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 SLC6A3Q01959 620 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 TAF5Q15542 800 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 HECTD3Q5T447 861 aa31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 ALKBH5Q6P6C2 394 aaKnown RBP31.04■■■□□ 2.56
LIMCH1-211ENST00000509638 TDRD5Q8NAT2 981 aaKnown RBP31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms