RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 STARD8Q92502 1023 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 EME1Q96AY2 570 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TAMM41Q96BW9 452 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 SLC29A1Q99808 456 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 WDR83Q9BRX9 315 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ZBED2Q9BTP6 218 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 BRIP1Q9BX63 1249 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PCDHAC1Q9H158 963 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 STN1Q9H668 368 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 HOMER2Q9NSB8 354 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TXNDC16Q9P2K2 825 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 EPS15L1Q9UBC2 864 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 BCAP29Q9UHQ4 241 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 DNAJC16Q9Y2G8 782 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 KRBA1A5PL33 1030 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MIF4GDA9UHW6 222 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 COPEO14579 308 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ENO2P09104 434 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 FGFR2P21802 821 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 GNA11P29992 359 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ABCG1P45844 678 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 IREB2P48200 963 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CLCQ05315 142 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PTK6Q13882 451 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ZNF423Q2M1K9 1284 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TRIM16LQ309B1 348 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 AAGABQ6PD74 315 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 RFPL4BQ6ZWI9 263 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 USP43Q70EL4 1123 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 SETD3Q86TU7 594 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 RHOT2Q8IXI1 618 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 OFCC1Q8IZS5 231 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PLEKHO2Q8TD55 490 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TFB1MQ8WVM0 346 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CD101Q93033 1021 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 VCPIP1Q96JH7 1222 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 DCAF5Q96JK2 942 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 C11orf70Q9BRQ4 267 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CCDC106Q9BWC9 280 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 BBS2Q9BXC9 721 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 NOL6Q9H6R4 1146 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 WDR6Q9NNW5 1121 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 DAPK2Q9UIK4 370 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 GIT1Q9Y2X7 761 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 NCANO14594 1321 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 DIP2CQ9Y2E4 1556 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TMEM94Q12767 1356 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MON2Q7Z3U7 1717 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PCM1Q15154 2024 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 DDX39AO00148 427 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MATN2O00339 956 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CSDE1O75534 798 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 GABBR2O75899 941 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TNFAIP8O95379 198 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 NCAM1P13591 858 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CCDC130P13994 396 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CCR10P46092 362 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 CLK3P49761 638 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 NUDT2P50583 147 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 LSM3P62310 102 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PPP1R3AQ16821 1122 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 MTX3Q5HYI7 312 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 LAYNQ6UX15 382 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TXNRD3Q86VQ6 643 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 PQLC1Q8N2U9 271 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 BHLHE22Q8NFJ8 381 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 ZNF398Q8TD17 642 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 SREK1Q8WXA9 508 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 E2F7Q96AV8 911 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 AGAP3Q96P47 875 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 RAB34Q9BZG1 259 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 UNKQ9C0B0 810 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 COQ10BQ9H8M1 238 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 TYW1Q9NV66 732 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 AP4E1Q9UPM8 1137 aa7.53□□□□□ -1.2
LIMCH1-207ENST00000508466 SLIT1O75093 1534 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TMEM150BA6NC51 233 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CALUO43852 315 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 TBCAO75347 108 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 GMNNO75496 209 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 SLITRK3O94933 977 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CHEK2O96017 543 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 HOXA13P31271 388 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 STIP1P31948 543 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 NR1H2P55055 460 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 MLLT10P55197 1068 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 STX3Q13277 289 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PPP2R5DQ14738 602 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CCNG2Q16589 344 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 USH1GQ495M9 461 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PITRM1Q5JRX3 1037 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 AARS2Q5JTZ9 985 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ERI1Q8IV48 349 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 CCDC89Q8N998 374 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 FAM47BQ8NA70 645 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 NETO2Q8NC67 525 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PDZD8Q8NEN9 1154 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 ATP6V1E2Q96A05 226 aa7.52□□□□□ -1.21
LIMCH1-207ENST00000508466 PPWD1Q96BP3 646 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms