RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PCED1BQ96HM7 432 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 MRGPRX1Q96LB2 322 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 GABRG3Q99928 467 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 FAM213AQ9BRX8 229 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 EHD2Q9NZN4 543 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 ITGA11Q9UKX5 1188 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 RAD54BQ9Y620 910 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 A0A1B0GTW7 788 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 TK2O00142 265 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 TULP1O00294 542 aaPredicted RBP17.54■□□□□ 0.4
VIM-208ENST00000497849 KRT19P08727 400 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 PLA2G2AP14555 144 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 CACNA2D1P54289 1103 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 HMGN5P82970 282 aaKnown RBP17.54■□□□□ 0.4
VIM-208ENST00000497849 MCM6Q14566 821 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 BBS7Q8IWZ6 715 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 CHPFQ8IZ52 775 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 ZCCHC9Q8N567 271 aaKnown RBP17.54■□□□□ 0.4
VIM-208ENST00000497849 FAM184AQ8NB25 1140 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 CACTINQ8WUQ7 758 aaKnown RBP17.54■□□□□ 0.4
VIM-208ENST00000497849 WBP2Q969T9 261 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 SAAL1Q96ER3 474 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 C8orf48Q96LL4 319 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 GAREM1Q9H706 876 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 PRDM16Q9HAZ2 1276 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 SPHK2Q9NRA0 654 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 TM7SF3Q9NS93 570 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 TMEM30AQ9NV96 361 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 FNDC3AQ9Y2H6 1198 aaKnown RBP17.54■□□□□ 0.4
VIM-208ENST00000497849 PTPRQQ9UMZ3 2332 aa17.54■□□□□ 0.4
VIM-208ENST00000497849 KNTC1P50748 2209 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 FAM149AA5PLN7 773 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 TRIM66O15016 1216 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 ZBTB24O43167 697 aaPredicted RBP17.53■□□□□ 0.4
VIM-208ENST00000497849 COCHO43405 550 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 CILPO75339 1184 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 TBCAO75347 108 aaKnown RBP17.53■□□□□ 0.4
VIM-208ENST00000497849 PPP1R37O75864 691 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 KRT18P05783 430 aaKnown RBP17.53■□□□□ 0.4
VIM-208ENST00000497849 PDGFRBP09619 1106 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 ABCG1P45844 678 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 RBP5P82980 135 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 KCNA1Q09470 495 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 POSTNQ15063 836 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 MAPRE1Q15691 268 aaKnown RBP17.53■□□□□ 0.4
VIM-208ENST00000497849 ANO4Q32M45 955 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 PREPLQ4J6C6 727 aaPredicted RBP17.53■□□□□ 0.4
VIM-208ENST00000497849 NUDT18Q6ZVK8 323 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 DPH6Q7L8W6 267 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 ZNF720Q7Z2F6 126 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 PIP4K2CQ8TBX8 421 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 MYCBPAPQ8TBZ2 947 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 LIMCH1Q9UPQ0 1083 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 NME7Q9Y5B8 376 aa17.53■□□□□ 0.4
VIM-208ENST00000497849 PRRT4C9JH25 899 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 ATXN7O15265 892 aaPredicted RBP17.52■□□□□ 0.4
VIM-208ENST00000497849 CD6P30203 668 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 HLA-BQ31612 363 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 TDRD10Q5VZ19 366 aaKnown RBP17.52■□□□□ 0.4
VIM-208ENST00000497849 SDE2Q6IQ49 451 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 GALNT15Q8N3T1 639 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 RHBDD1Q8TEB9 315 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 RAD54LQ92698 747 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 DCBLD2Q96PD2 775 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 SLITRK1Q96PX8 696 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 DUSP9Q99956 384 aaKnown RBP17.52■□□□□ 0.4
VIM-208ENST00000497849 STRA6Q9BX79 667 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 MTMR12Q9C0I1 747 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 WSB2Q9NYS7 404 aaPredicted RBP17.52■□□□□ 0.4
VIM-208ENST00000497849 RBAKQ9NYW8 714 aaPredicted RBP17.52■□□□□ 0.4
VIM-208ENST00000497849 BTBD3Q9Y2F9 522 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 NFE2L3Q9Y4A8 694 aa17.52■□□□□ 0.4
VIM-208ENST00000497849 TMEM131Q92545 1883 aa17.52■□□□□ 0.39
VIM-208ENST00000497849 MUC22E2RYF6 1773 aaPredicted RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 GOLGA8CPA6NN73 597 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 WASH3PC4AMC7 463 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 CER1O95813 267 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 WARSP23381 471 aaKnown RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 ITPKBP27987 946 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 MATKP42679 507 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 IFRD2Q12894 506 aaPredicted RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 RILPL1Q5EBL4 403 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 GRAMD4Q6IC98 578 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 KIAA1324Q6UXG2 1013 aaKnown RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 PDCD7Q8N8D1 485 aaKnown RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 HVCN1Q96D96 273 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 TOE1Q96GM8 510 aaKnown RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 CDC6Q99741 560 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 PDE11AQ9HCR9 933 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 DNAJC17Q9NVM6 304 aaKnown RBP17.51■□□□□ 0.39
VIM-208ENST00000497849 SH3BP1Q9Y3L3 701 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 PCDHGB2Q9Y5G2 931 aa17.51■□□□□ 0.39
VIM-208ENST00000497849 MEI4A8MW99 385 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 FLRT2O43155 660 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 SLC26A4O43511 780 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 NCAM1P13591 858 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 RABEP1Q15276 862 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 SMAD1Q15797 465 aaKnown RBP17.5■□□□□ 0.39
VIM-208ENST00000497849 MDH1BQ5I0G3 518 aa17.5■□□□□ 0.39
VIM-208ENST00000497849 ARL6IP4Q66PJ3 421 aaKnown RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms