RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MYO1FO00160 1098 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 TPP1O14773 563 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 SRGAP2O75044 1071 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 JTBO76095 146 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PRKCBP05771 671 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 IL6RP08887 468 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 MYF5P13349 255 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 TPH1P17752 444 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 RPL17P18621 184 aaKnown RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 DRD4P21917 467 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 KLRC1P26715 233 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 CTCFP49711 727 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ITGA8P53708 1063 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 CCNIQ14094 377 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 SLC29A2Q14542 456 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 GBX1Q14549 363 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 GRM3Q14832 879 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF362Q5T0B9 420 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 DENND2CQ68D51 928 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 MAVSQ7Z434 540 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF280BQ86YH2 543 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 IZUMO1Q8IYV9 350 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 NGDNQ8NEJ9 315 aaKnown RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 RP9Q8TA86 221 aaKnown RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 APIPQ96GX9 242 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 BBC3Q96PG8 261 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 MESP1Q9BRJ9 268 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 CHMP4AQ9BY43 222 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PCGF6Q9BYE7 350 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 DPH1Q9BZG8 443 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ZCWPW1Q9H0M4 648 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 NUP62CLQ9H1M0 184 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 CXorf36Q9H7Y0 433 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ATP6V0A4Q9HBG4 840 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PNPLA8Q9NP80 782 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 SERHLQ9NQF3 203 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ARPP21Q9UBL0 812 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 DDX20Q9UHI6 824 aaKnown RBP2.62□□□□□ -1.99
HMGB1-208ENST00000490788 TNFRSF18Q9Y5U5 241 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 CAMSAP2Q08AD1 1489 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF518AQ6AHZ1 1483 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 RGPD1P0DJD0 1748 aa2.62□□□□□ -1.99
HMGB1-208ENST00000490788 PARD3Q8TEW0 1356 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TIAM1Q13009 1591 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ABCA6Q8N139 1617 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SETD5Q9C0A6 1442 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TRIM43BA6NCK2 446 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 AQP7P3A6NL99 342 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 RHPN2P1A8MT19 583 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TMEM233B4DJY2 109 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 H0YIZ8 118 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SMIM22K7EJ46 135 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 RAB27BO00194 218 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 FOXN3O00409 490 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CCP110O43303 1012 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PQBP1O60828 265 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PIAS2O75928 621 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 HRGP04196 525 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 RHCEP18577 417 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 KCNA3P22001 575 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ADORA2AP29274 412 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 EPHA3P29320 983 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 PTDSS1P48651 473 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 RPS16P62249 146 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 FMO1Q01740 532 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 RHDQ02161 417 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 STK3Q13188 491 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 GRM1Q13255 1194 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ARHGEF7Q14155 803 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CCDC142Q17RM4 750 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CERKLQ49MI3 558 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TMEM119Q4V9L6 283 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 HSP90AB2PQ58FF8 381 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 C3orf38Q5JPI3 329 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 L1TD1Q5T7N2 865 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 KIAA1614Q5VZ46 1190 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 FCRLBQ6BAA4 426 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SWSAP1Q6NVH7 229 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 MTHFD1LQ6UB35 978 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SERPINA13PQ6UXR4 307 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 NAPRTQ6XQN6 538 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 BRINP3Q76B58 766 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CHST15Q7LFX5 561 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 CAND1Q86VP6 1230 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 DGKHQ86XP1 1220 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 UNC5CLQ8IV45 518 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ABRAQ8N0Z2 381 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SDR16C5Q8N3Y7 309 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SIRT6Q8N6T7 355 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 DNAJB14Q8TBM8 379 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 HASPINQ8TF76 798 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TMEM171Q8WVE6 324 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 TRIM43Q96BQ3 446 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 NMD3Q96D46 503 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 DAZAP1Q96EP5 407 aaKnown RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF668Q96K58 619 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 SNX27Q96L92 541 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 GBA2Q9HCG7 927 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-208ENST00000490788 DUSP22Q9NRW4 184 aa2.61□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF212Q9UDV6 495 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms