RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 HOXC13P31276 330 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 ATXN1P54253 815 aaKnown RBP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 MRPS21P82921 87 aaKnown RBP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 PREPLQ4J6C6 727 aaPredicted RBP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 RHBDF2Q6PJF5 856 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 PRR23CQ6ZRP0 262 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 NETO1Q8TDF5 533 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 CYFIP2Q96F07 1278 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 ZFRQ96KR1 1074 aaKnown RBP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 GTPBP4Q9BZE4 634 aaKnown RBP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 CCSER2Q9H7U1 834 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 MMRN2Q9H8L6 949 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 SCML2Q9UQR0 700 aa21.52■■□□□ 1.04
PDLIM4-206ENST00000474421 K7EQS6 105 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 TLR5O60602 858 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 APODP05090 189 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 ADORA2BP29275 332 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 NUCB2P80303 420 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 GAD2Q05329 585 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 GOLGA8FQ08AF8 430 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 GOLGA8DPQ0D2H9 430 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 HSF5Q4G112 596 aaPredicted RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 FMR1NBQ8N0W7 255 aaPredicted RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 TSTD1Q8NFU3 115 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 ZC3H10Q96K80 434 aaKnown RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 GSDMAQ96QA5 445 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 TSG101Q99816 390 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 FAM124BQ9H5Z6 455 aaPredicted RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 HOOK1Q9UJC3 728 aaKnown RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 PCDHA5Q9Y5H7 936 aa21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.51■■□□□ 1.03
PDLIM4-206ENST00000474421 SCAMP3O14828 347 aaKnown RBP21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 CILPO75339 1184 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 EPN2O95208 641 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 KAT7O95251 611 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 SMC2O95347 1197 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 CD58P19256 250 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 MXI1P50539 228 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 SEC13P55735 322 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 PNOCQ13519 176 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 COBLL1Q53SF7 1204 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 C2orf27AQ580R0 203 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 BTBD8Q5XKL5 378 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 CLEC20AQ6ZU45 233 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 KBTBD6Q86V97 674 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 FBXL13Q8NEE6 735 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 TWNKQ96RR1 684 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 CYLDQ9NQC7 956 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 POLR3BQ9NW08 1133 aaPredicted RBP21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 MMP17Q9ULZ9 603 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 PCDHGA5Q9Y5G8 931 aa21.5■■□□□ 1.03
PDLIM4-206ENST00000474421 A0A0A0MRY4 1105 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 GRIA2P42262 883 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 ELF2Q15723 593 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 LY6G5CQ5SRR4 150 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 ZNF658Q5TYW1 1059 aaPredicted RBP21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 NUDT18Q6ZVK8 323 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 C11orf74Q86VG3 221 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 SMYD4Q8IYR2 804 aaPredicted RBP21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 ARHGEF4Q9NR80 690 aa21.49■■□□□ 1.03
PDLIM4-206ENST00000474421 SLC16A3O15427 465 aaKnown RBP21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 HOXC11O43248 304 aaPredicted RBP21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 RHOBTB1O94844 696 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 ACO1P21399 889 aaKnown RBP21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 ATP5C1P36542 298 aaKnown RBP21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 TNFRSF4P43489 277 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 SLC6A11P48066 632 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 PSEN1P49768 467 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 DGKEP52429 567 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 KLHDC10Q6PID8 442 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 TADA2BQ86TJ2 420 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 WHAMMQ8TF30 809 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 ARRDC1-AS1Q9H2J1 176 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 RAB20Q9NX57 234 aa21.48■■□□□ 1.03
PDLIM4-206ENST00000474421 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 MED19A0JLT2 244 aaPredicted RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 HHLA1C9JL84 531 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 SLC30A4O14863 429 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 ALDH1A2O94788 518 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 ZNF806P0C7X5 589 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 PRCPP42785 496 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 FKBP3Q00688 224 aaKnown RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 PLK5Q496M5 336 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 USP39Q53GS9 565 aaKnown RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 HTR3DQ70Z44 454 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 BBS7Q8IWZ6 715 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 C12orf50Q8NA57 414 aaPredicted RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 KCNV2Q8TDN2 545 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 JAKMIP2Q96AA8 810 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 EEF2KMTQ96G04 330 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 HEXIM2Q96MH2 286 aaKnown RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 KLF16Q9BXK1 252 aaPredicted RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 DUSP16Q9BY84 665 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 SPHK2Q9NRA0 654 aa21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 LSM7Q9UK45 103 aaKnown RBP21.47■■□□□ 1.03
PDLIM4-206ENST00000474421 MYO18AQ92614 2054 aaKnown RBP21.46■■□□□ 1.03
PDLIM4-206ENST00000474421 CYP26A1O43174 497 aa21.46■■□□□ 1.03
PDLIM4-206ENST00000474421 IRF1P10914 325 aa21.46■■□□□ 1.03
PDLIM4-206ENST00000474421 KIF11P52732 1056 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms