RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ADAM9Q13443 819 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 EDRF1Q3B7T1 1238 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 C2orf27AQ580R0 203 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 WHAMMQ8TF30 809 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 WBP2Q969T9 261 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 LOXL4Q96JB6 756 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 ZC3H10Q96K80 434 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 DUSP9Q99956 384 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 IMPG2Q9BZV3 1241 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 TMEM8AQ9HCN3 771 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 TBC1D14Q9P2M4 693 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 PLXND1Q9Y4D7 1925 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 KMT2BQ9UMN6 2715 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 TPRP12270 2363 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 MYO18AQ92614 2054 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 GDF9O60383 454 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 CILPO75339 1184 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 FAM200BP0CF97 657 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 KRT13P13646 458 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 PNOCQ13519 176 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 LY6G5CQ5SRR4 150 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 FMR1NBQ8N0W7 255 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 PHTF2Q8N3S3 785 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 CCDC26Q8TAB7 109 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 NETO1Q8TDF5 533 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 EEF2KMTQ96G04 330 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 HNRNPABQ99729 332 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 RTKNQ9BST9 563 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 FBXO44Q9H4M3 255 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 MMRN2Q9H8L6 949 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 CYP3A43Q9HB55 503 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 ABCA7Q8IZY2 2146 aa19.87■□□□□ 0.77
CCDC88B-206ENST00000473405 FRYQ5TBA9 3013 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 CYP26A1O43174 497 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 TLR5O60602 858 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 KAT7O95251 611 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 CD58P19256 250 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 CCDC6Q16204 474 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 PLK5Q496M5 336 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 BBS7Q8IWZ6 715 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 SEMA4DQ92854 862 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 JAKMIP2Q96AA8 810 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 OTUB2Q96DC9 234 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 PNKPQ96T60 521 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 NT5C1AQ9BXI3 368 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 DUSP15Q9H1R2 295 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 ARRDC1-AS1Q9H2J1 176 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 OSER1Q9NX31 292 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 MMP17Q9ULZ9 603 aa19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 TNRC6BQ9UPQ9 1833 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-206ENST00000473405 THADAQ6YHU6 1953 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 DCDC2BA2VCK2 349 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 SLC30A4O14863 429 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 DCLK1O15075 740 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 GREM1O60565 184 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 TBX18O95935 607 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 IRF1P10914 325 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 HNRNPLP14866 589 aaKnown RBP eCLIP19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 GTF2H1P32780 548 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 KDSRQ06136 332 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 SF3A2Q15428 464 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 PLA2G2CQ5R387 149 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 RASSF3Q86WH2 238 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 ETFBKMTQ8IXQ9 262 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 CCDC33Q8N5R6 958 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 TSTD1Q8NFU3 115 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 CYFIP2Q96F07 1278 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 PNPLA8Q9NP80 782 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 CYLDQ9NQC7 956 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 TLR8Q9NR97 1041 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 SCML2Q9UQR0 700 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 SH3BP1Q9Y3L3 701 aa19.85■□□□□ 0.77
CCDC88B-206ENST00000473405 A0A0A0MRY4 1105 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 HOXC11O43248 304 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 FOXD2O60548 495 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 KIR2DL1P43626 348 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 MXI1P50539 228 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 MRPS21P82921 87 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 KRT39Q6A163 491 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 ALLCQ8N6M5 410 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 IL17RCQ8NAC3 791 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 ARID3AQ99856 593 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 KLF16Q9BXK1 252 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 NACA2Q9H009 215 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 NMUR1Q9HB89 426 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 ARHGEF4Q9NR80 690 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 PCDHA5Q9Y5H7 936 aa19.84■□□□□ 0.77
CCDC88B-206ENST00000473405 APODP05090 189 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 ZNF806P0C7X5 589 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 ACO1P21399 889 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 PRCPP42785 496 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 DGKEP52429 567 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 GAD2Q05329 585 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 CRY1Q16526 586 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 PPP1R26Q5T8A7 1209 aaPredicted RBP19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 ANO7Q6IWH7 933 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 TMEM92Q6UXU6 159 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 TMEM25Q86YD3 366 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 ENGASEQ8NFI3 743 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms