RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SMOQ99835 787 aa20.91■□□□□ 0.94
COL9A3-210ENST00000472880 FBXO44Q9H4M3 255 aa20.91■□□□□ 0.94
COL9A3-210ENST00000472880 RXFP3Q9NSD7 469 aa20.91■□□□□ 0.94
COL9A3-210ENST00000472880 INVSQ9Y283 1065 aa20.91■□□□□ 0.94
COL9A3-210ENST00000472880 ANTXRLA6NF34 631 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 MAPK13O15264 365 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 KLF8O95600 359 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-210ENST00000472880 ZDHHC11BP0C7U3 371 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 PRR29P0C7W0 189 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 FAM200BP0CF97 657 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 IRF1P10914 325 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 ADORA2BP29275 332 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 TIE1P35590 1138 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 GRIA2P42262 883 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 NDUFA8P51970 172 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 HSF5Q4G112 596 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-210ENST00000472880 SFTPA1Q8IWL2 248 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 TXNDC5Q8NBS9 432 aaKnown RBP20.9■□□□□ 0.94
COL9A3-210ENST00000472880 ZMIZ2Q8NF64 920 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 MDGA1Q8NFP4 955 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 CNTNAP3BQ96NU0 1288 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 CNTNAP3Q9BZ76 1288 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 CSNK1G1Q9HCP0 422 aa20.9■□□□□ 0.94
COL9A3-210ENST00000472880 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.9■□□□□ 0.94
COL9A3-210ENST00000472880 TLR8Q9NR97 1041 aaKnown RBP20.9■□□□□ 0.94
COL9A3-210ENST00000472880 TLR5O60602 858 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 BEST1O76090 585 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 RHOBTB3O94955 611 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 KRT13P13646 458 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 MESP2Q0VG99 397 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 NFIL3Q16649 462 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 EOGTQ5NDL2 527 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 C1orf220Q5T0J3 134 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 STPG1Q5TH74 334 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 PMS2CLQ68D20 193 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 TCEAL6Q6IPX3 200 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 INTS8Q75QN2 995 aaKnown RBP20.89■□□□□ 0.93
COL9A3-210ENST00000472880 BBS7Q8IWZ6 715 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 C12orf29Q8N999 325 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 IL17RCQ8NAC3 791 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 TCEAL3Q969E4 200 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 CHAMP1Q96JM3 812 aa20.89■□□□□ 0.93
COL9A3-210ENST00000472880 DUSP9Q99956 384 aaKnown RBP20.89■□□□□ 0.93
COL9A3-210ENST00000472880 POLMQ9NP87 494 aaPredicted RBP20.89■□□□□ 0.93
COL9A3-210ENST00000472880 BCLAF3A2AJT9 711 aaKnown RBP20.88■□□□□ 0.93
COL9A3-210ENST00000472880 HOXC11O43248 304 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-210ENST00000472880 CAVIN2O95810 425 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 TRIM49P0CI25 452 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 TRIM49CP0CI26 452 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 TNFRSF4P43489 277 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 GCLMP48507 274 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 GOLGA8FQ08AF8 430 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 GOLGA8DPQ0D2H9 430 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 INCA1Q0VD86 236 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 DPYDQ12882 1025 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 ANO4Q32M45 955 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 PREPLQ4J6C6 727 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-210ENST00000472880 TMEM92Q6UXU6 159 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 FAM186BQ8IYM0 893 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 CCDC150Q8NCX0 1101 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 JAKMIP2Q96AA8 810 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 DNAI2Q9GZS0 605 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 MMRN2Q9H8L6 949 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 SPHK2Q9NRA0 654 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 MAPK8IP1Q9UQF2 711 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 SPTBN2O15020 2390 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 MYH10P35580 1976 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 SDK1Q7Z5N4 2213 aa20.88■□□□□ 0.93
COL9A3-210ENST00000472880 FAM237AA0A1B0GTK4 181 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 SGK1O00141 431 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 RPL13P26373 211 aaKnown RBP20.87■□□□□ 0.93
COL9A3-210ENST00000472880 RNF43Q68DV7 783 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 ETFBKMTQ8IXQ9 262 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 NAT16Q8N8M0 369 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 TAS1R2Q8TE23 839 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 WHAMMQ8TF30 809 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 SPACA7Q96KW9 195 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 TWNKQ96RR1 684 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 HNRNPABQ99729 332 aaKnown RBP20.87■□□□□ 0.93
COL9A3-210ENST00000472880 EDEM2Q9BV94 578 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 NT5C1AQ9BXI3 368 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 NIF3L1Q9GZT8 377 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 SCAND2PQ9GZW5 306 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-210ENST00000472880 CYP3A43Q9HB55 503 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 BCCIPQ9P287 314 aaKnown RBP eCLIP20.87■□□□□ 0.93
COL9A3-210ENST00000472880 DEC1Q9P2X7 70 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 CIZ1Q9ULV3 898 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-210ENST00000472880 ZDHHC9Q9Y397 364 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 ATP6V1DQ9Y5K8 247 aa20.87■□□□□ 0.93
COL9A3-210ENST00000472880 A0A0A0MRY4 1105 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 TBC1D3BA6NDS4 549 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 CYP26A1O43174 497 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 CHRM1P11229 460 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-210ENST00000472880 HNRNPLP14866 589 aaKnown RBP eCLIP20.86■□□□□ 0.93
COL9A3-210ENST00000472880 CD58P19256 250 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 BCKDHBP21953 392 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 PSMC2P35998 433 aaKnown RBP20.86■□□□□ 0.93
COL9A3-210ENST00000472880 KIR2DL1P43626 348 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-210ENST00000472880 EMC10Q5UCC4 262 aa20.86■□□□□ 0.93
COL9A3-210ENST00000472880 KRBA2Q6ZNG9 492 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms