RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 USP4Q13107 963 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 RUNX3Q13761 415 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 KCNJ12Q14500 433 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 STX1AQ16623 288 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 GOLGA7BQ2TAP0 167 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 TCP11X2Q5H9J9 407 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 LCLAT1Q6UWP7 414 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 GPRIN1Q7Z2K8 1008 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 CCDC186Q7Z3E2 898 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 PIGZQ86VD9 579 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 TTC30AQ86WT1 665 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 CCDC105Q8IYK2 499 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 ZNF276Q8N554 614 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 DTWD2Q8NBA8 298 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 RBBP8NLQ8NC74 664 aaPredicted RBP13.74□□□□□ -0.21
COL28A1-206ENST00000465339 PTCD2Q8WV60 388 aaKnown RBP13.74□□□□□ -0.21
COL28A1-206ENST00000465339 OSCP1Q8WVF1 389 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 FAM3CQ92520 227 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 KREMEN1Q96MU8 473 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 DUS2Q9NX74 493 aaKnown RBP13.74□□□□□ -0.21
COL28A1-206ENST00000465339 GTSE1Q9NYZ3 720 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 NFE2L3Q9Y4A8 694 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 USP3Q9Y6I4 520 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 SHISA7A6NL88 538 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 SPECC1L-ADORA2AF8WAN1 911 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 XPO1O14980 1071 aaKnown RBP13.73□□□□□ -0.21
COL28A1-206ENST00000465339 COCHO43405 550 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 DCNP07585 359 aaKnown RBP13.73□□□□□ -0.21
COL28A1-206ENST00000465339 SETSIPP0DME0 302 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 RPS9P46781 194 aaKnown RBP13.73□□□□□ -0.21
COL28A1-206ENST00000465339 IFNAR2P48551 515 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 ZNF132P52740 706 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 TNK2Q07912 1038 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 PDE4CQ08493 712 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 HSP90AA4PQ58FG1 418 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 RAB41Q5JT25 222 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 MIIPQ5JXC2 388 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 ARHGAP18Q8N392 663 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 TFAP2BQ92481 460 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 ATP2A3Q93084 1043 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 CLDN23Q96B33 292 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 NACA2Q9H009 215 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 CCSER2Q9H7U1 834 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 CYLDQ9NQC7 956 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 CLIC5Q9NZA1 410 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 DLGAP2Q9P1A6 1054 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 APEX2Q9UBZ4 518 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 MTF2Q9Y483 593 aaPredicted RBP13.73□□□□□ -0.21
COL28A1-206ENST00000465339 CPQQ9Y646 472 aa13.73□□□□□ -0.21
COL28A1-206ENST00000465339 COL4A3Q01955 1670 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 SLC9A3R1O14745 358 aaPredicted RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 CYP26A1O43174 497 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TLR5O60602 858 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TPM2P07951 284 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 KRT5P13647 590 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 PTMSP20962 102 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TARSP26639 723 aaKnown RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 CTHP32929 405 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 ATP5C1P36542 298 aaKnown RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 PLA2G4AP47712 749 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TKTL1P51854 596 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 ZXDBP98169 803 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 NR1H3Q13133 447 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 PKDCCQ504Y2 493 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 CDKAL1Q5VV42 579 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 PM20D1Q6GTS8 502 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 KLHDC10Q6PID8 442 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TADA2BQ86TJ2 420 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 CPA6Q8N4T0 437 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TTC16Q8NEE8 873 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 PRSS33Q8NF86 280 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TTC8Q8TAM2 541 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 RIN3Q8TB24 985 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 UBA3Q8TBC4 463 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 KCTD13Q8WZ19 329 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 EXOC4Q96A65 974 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 CDK5RAP1Q96SZ6 601 aaKnown RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 NAT10Q9H0A0 1025 aaKnown RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 EBF3Q9H4W6 596 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 LRRC4Q9HBW1 653 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 HPS4Q9NQG7 708 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TMEM63CQ9P1W3 806 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 TBC1D14Q9P2M4 693 aa13.72□□□□□ -0.21
COL28A1-206ENST00000465339 NDRG2Q9UN36 371 aaKnown RBP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL28A1-206ENST00000465339 A0A1W2PQH9 124 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 E2F8A0AVK6 867 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 PES1O00541 588 aaKnown RBP13.71□□□□□ -0.21
COL28A1-206ENST00000465339 MED7O43513 233 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 LETM1O95202 739 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-206ENST00000465339 ZBED1O96006 694 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 NUDT7P0C024 238 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 RALAP11233 206 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 RARGP13631 454 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 PGFP49763 221 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 MYL5Q02045 173 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 TCF15Q12870 199 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 FZD5Q13467 585 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 EML3Q32P44 896 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 TRIM68Q6AZZ1 485 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms