RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 WDR83Q9BRX9 315 aaKnown RBP15.71■□□□□ 0.11
LDLR-202ENST00000455727 ZNF670Q9BS34 389 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 PCDH18Q9HCL0 1135 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 SLC40A1Q9NP59 571 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 NGRNQ9NPE2 291 aaKnown RBP15.71■□□□□ 0.11
LDLR-202ENST00000455727 GDAP2Q9NXN4 497 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 PAK5Q9P286 719 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 GNEQ9Y223 722 aaKnown RBP15.71■□□□□ 0.11
LDLR-202ENST00000455727 GINS2Q9Y248 185 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 BCLAF3A2AJT9 711 aaKnown RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 VGLL3A8MV65 326 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 APOL1O14791 398 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 DYNC1LI2O43237 492 aaPredicted RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 TYROBPO43914 113 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 GABBR2O75899 941 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 CYP2C9P11712 490 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 FOXN2P32314 431 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 ADAM17P78536 824 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 XKR4Q5GH76 650 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 CAPN12Q6ZSI9 719 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 ZC3H18Q86VM9 953 aaKnown RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 PQLC3Q8N755 202 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 ANKRD52Q8NB46 1076 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 CENPIQ92674 756 aaPredicted RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 C18orf25Q96B23 403 aaPredicted RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 OSMRQ99650 979 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 C11orf84Q9BUA3 381 aaPredicted RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 TRIM6Q9C030 488 aaPredicted RBP15.71■□□□□ 0.1
LDLR-202ENST00000455727 DNAI2Q9GZS0 605 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 FAM49BQ9NUQ9 324 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 CLEC11AQ9Y240 323 aa15.71■□□□□ 0.1
LDLR-202ENST00000455727 A8MXQ7 604 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 H7C0C1 242 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 SPAG7O75391 227 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 SPAG6O75602 509 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 RECQL4O94761 1208 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 PNPLA4P41247 253 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 ATP5OP48047 213 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 BCAR1P56945 870 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 ADCY1Q08828 1119 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 BST2Q10589 180 aaKnown RBP15.7■□□□□ 0.1
LDLR-202ENST00000455727 FBXO47Q5MNV8 452 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 SCYL2Q6P3W7 929 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 C4orf22Q6V702 233 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 SLC26A9Q7LBE3 791 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 FBF1Q8TES7 1133 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 SNRNP25Q9BV90 132 aaKnown RBP15.7■□□□□ 0.1
LDLR-202ENST00000455727 HAUS2Q9NVX0 235 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 HES2Q9Y543 173 aa15.7■□□□□ 0.1
LDLR-202ENST00000455727 XPOTO43592 962 aaKnown RBP15.69■□□□□ 0.1
LDLR-202ENST00000455727 TOMM70O94826 608 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 KCNE1P15382 129 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 MAGEA6P43360 314 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 BCAT1P54687 386 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 HDAC4P56524 1084 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 BBS9Q3SYG4 887 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 GALNTL6Q49A17 601 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 SPRYD7Q5W111 196 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 LIMS2Q7Z4I7 341 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 PCDH19Q8TAB3 1148 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 PTPN18Q99952 460 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 PITPNM3Q9BZ71 974 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 NXF3Q9H4D5 531 aaKnown RBP15.69■□□□□ 0.1
LDLR-202ENST00000455727 KLC4Q9NSK0 619 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.69■□□□□ 0.1
LDLR-202ENST00000455727 GTF2IRD1Q9UHL9 959 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 STARD13Q9Y3M8 1113 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 TEX264Q9Y6I9 313 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 ZWINTO95229 277 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 ACADSBP45954 432 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 PDK4Q16654 411 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 RNF43Q68DV7 783 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 C1orf228Q6PIY5 440 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 FUKQ8N0W3 1084 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 MZB1Q8WU39 189 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 KBTBD7Q8WVZ9 684 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 ALKBH8Q96BT7 664 aaKnown RBP15.69■□□□□ 0.1
LDLR-202ENST00000455727 ZNF560Q96MR9 790 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 CYTH2Q99418 400 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 PAFAH2Q99487 392 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 KIF9Q9HAQ2 790 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 ABCF3Q9NUQ8 709 aa15.69■□□□□ 0.1
LDLR-202ENST00000455727 SMIM28A0A1B0GU29 152 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 A0A1W2PPM1 405 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 KPNA7A9QM74 516 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 HAS3O00219 553 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 ATP2C2O75185 946 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 CA4P22748 312 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 RPA3P35244 121 aaPredicted RBP15.68■□□□□ 0.1
LDLR-202ENST00000455727 GNL1P36915 607 aaPredicted RBP15.68■□□□□ 0.1
LDLR-202ENST00000455727 MSH2P43246 934 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 MFSD10Q14728 455 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 DPYSL2Q16555 572 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 GLRA4Q5JXX5 417 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 MORN1Q5T089 497 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 CGB2Q6NT52 195 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 DCAKDQ8WVC6 231 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 HSFY1Q96LI6 401 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 KCNN4O15554 427 aa15.68■□□□□ 0.1
LDLR-202ENST00000455727 ZFXP17010 805 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms