RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 GPR25O00155 361 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 DHX15O43143 795 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 MIPP30301 263 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 MBTD1Q05BQ5 628 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 C9orf57Q5W0N0 161 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TTC23LQ6PF05 361 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 HERC6Q8IVU3 1022 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 OR2W6PQ8NHA6 318 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 CASKIN2Q8WXE0 1202 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF669Q96BR6 464 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TSPAN18Q96SJ8 248 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 GPR63Q9BZJ6 419 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 RASSF4Q9H2L5 321 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 MRPL17Q9NRX2 175 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 AFF4Q9UHB7 1163 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PCDHA3Q9Y5H8 950 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SMIM28A0A1B0GU29 152 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NDUFS3O75489 264 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 RHOCP08134 193 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 GEMP55040 296 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 FMO1Q01740 532 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SPIRE1Q08AE8 756 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PALB2Q86YC2 1186 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 CFAP61Q8NHU2 1237 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TLR10Q9BXR5 811 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ATXN3LQ9H3M9 355 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ZCCHC17Q9NP64 241 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ARHGEF38Q9NXL2 777 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TUBGCP4Q9UGJ1 667 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 USP54Q70EL1 1684 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 MOXD2PA6NHM9 499 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 F8VP50 259 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 C22orf31O95567 290 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ATXN8OSP0DMR3 200 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PYGMP11217 842 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PAX3P23760 479 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 OXCT1P55809 520 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TUSC3Q13454 348 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ACAP1Q15027 740 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 POLD3Q15054 466 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PGBD3Q8N328 593 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SPDYE1Q8NFV5 336 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 HSFY1Q96LI6 401 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 GOLGA2P5Q9HBQ8 144 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PSMC3IPQ9P2W1 217 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 VPS28Q9UK41 221 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NUDT5Q9UKK9 219 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 MYH14Q7Z406 1995 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SIGLEC16A6NMB1 481 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF263O14978 683 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ASMTLO95671 621 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 AGTP01019 485 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 JCHAINP01591 159 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 GRB14Q14449 540 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 MAP3K21Q5TCX8 1036 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 LRIG3Q6UXM1 1119 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SLC24A5Q71RS6 500 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 LRRC8DQ7L1W4 858 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 PIGZQ86VD9 579 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 C12orf29Q8N999 325 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ANKRD52Q8NB46 1076 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 CDC26Q8NHZ8 85 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 STAMBPL1Q96FJ0 436 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 FAM129AQ9BZQ8 928 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 BCAS3Q9H6U6 928 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 VIPAS39Q9H9C1 493 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 BRCC3P46736 316 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SERPINB9P50453 376 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 OCRLQ01968 901 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 USP10Q14694 798 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 PPM1LQ5SGD2 360 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 MFSD7Q6UXD7 560 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ULK4Q96C45 1275 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ZFP42Q96MM3 310 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 EIF2AQ9BY44 585 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 TRIM54Q9BYV2 358 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 IRAK4Q9NWZ3 460 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 UXTQ9UBK9 157 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SRRDQ9UH36 339 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 COL22A1Q8NFW1 1626 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 FRMD3A2A2Y4 597 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 NT5C1B-RDH14C9J2C7 533 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 KITP10721 976 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 AKT1P31749 480 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 CASP2P42575 452 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 MAMLD1Q13495 774 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SLC29A2Q14542 456 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ZCWPW2Q504Y3 356 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 FAM133BQ5BKY9 247 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 SDE2Q6IQ49 451 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 ANKS3Q6ZW76 656 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 IRF2BP2Q7Z5L9 587 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 TFAP2DQ7Z6R9 452 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 FIBCD1Q8N539 461 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 CALML6Q8TD86 181 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 CELF6Q96J87 481 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 AAR2Q9Y312 384 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 GNRH1P01148 92 aa7.67□□□□□ -1.18
SYNE1-213ENST00000448038 C4BPAP04003 597 aaKnown RBP7.67□□□□□ -1.18
SYNE1-213ENST00000448038 TGM2P21980 687 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms