RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 USPL1Q5W0Q7 1092 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 UBE2E3Q969T4 207 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 EGFL8Q99944 293 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ATP4AP20648 1035 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PSMC5P62195 406 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SLC29A2Q14542 456 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DDI2Q5TDH0 399 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 C3orf62Q6ZUJ4 267 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ADAT2Q7Z6V5 191 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 RTKN2Q8IZC4 609 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 TC2NQ8N9U0 490 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SSU72Q9NP77 194 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 GPC6Q9Y625 555 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 UCHL3P15374 230 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 FXR2P51116 673 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-204ENST00000437048 SLC39A6Q13433 755 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PTPRNQ16849 979 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ATP13A5Q4VNC0 1218 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 STOX1Q6ZVD7 989 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 KCNV2Q8TDN2 545 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DCUN1D1Q96GG9 259 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 APOPT1Q96IL0 206 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 CLIC6Q96NY7 704 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ZSWIM1Q9BR11 485 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SEPT9Q9UHD8 586 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 FAM92AA1XBS5 289 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 LOC110117498-PIK3R3F6TDL0 507 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 RARBP10826 455 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ARID3BQ8IVW6 561 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 DCLK2Q8N568 766 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ADCY4Q8NFM4 1077 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 OR6Y1Q8NGX8 325 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DNAJB8Q8NHS0 232 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PIK3R3Q92569 461 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 TMA16Q96EY4 203 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 ANO3Q9BYT9 981 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ZFYVE1Q9HBF4 777 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 GPN1Q9HCN4 374 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 CDH9Q9ULB4 789 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 EFCAB6Q5THR3 1501 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 CD4P01730 458 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 MAPTP10636 758 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 TNK2Q07912 1038 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ZNF235Q14590 738 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SH3BP5LQ7L8J4 393 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 GALNT15Q8N3T1 639 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DAGLBQ8NCG7 672 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 WNK4Q96J92 1243 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 NSMCE2Q96MF7 247 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DNAAF2Q9NVR5 837 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 FETUBQ9UGM5 382 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DDX20Q9UHI6 824 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 PTBP2Q9UKA9 531 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 AFF2P51816 1311 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 ZBTB39O15060 712 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 ZNF23P17027 643 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TGM2P21980 687 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 GRM4Q14833 912 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 C5orf22Q49AR2 442 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 PACS1Q6VY07 963 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 SPICE1Q8N0Z3 855 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 NEURL4Q96JN8 1562 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 CLOCKO15516 846 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 ITGB6P18564 788 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 QPRTQ15274 297 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 NT5DC1Q5TFE4 455 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TXNDC11Q6PKC3 985 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TAB3Q8N5C8 712 aaPredicted RBP7.4□□□□□ -1.22
VPS53-204ENST00000437048 TBC1D30Q9Y2I9 924 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TESPA1A2RU30 521 aaPredicted RBP7.4□□□□□ -1.22
VPS53-204ENST00000437048 ASS1P00966 412 aaKnown RBP7.4□□□□□ -1.22
VPS53-204ENST00000437048 PRCPP42785 496 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 DENND1BQ6P3S1 775 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 CASP12Q6UXS9 341 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 BAIAP2Q9UQB8 552 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 NDUFAF1Q9Y375 327 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 SLIT1O75093 1534 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 PHF20L1A8MW92 1017 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 EXTL3O43909 919 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 SORBS3O60504 671 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 FBXO21O94952 628 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 NT5DC4Q86YG4 428 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TUBGCP5Q96RT8 1024 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 SEC31BQ9NQW1 1179 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 CCNE2O96020 404 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 ERBB2P04626 1255 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 MAGEA8P43361 318 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 PKN3Q6P5Z2 889 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 C8orf59Q8N0T1 100 aaPredicted RBP7.4□□□□□ -1.22
VPS53-204ENST00000437048 TPCN2Q8NHX9 752 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 AENQ8WTP8 325 aaKnown RBP7.4□□□□□ -1.22
VPS53-204ENST00000437048 CHID1Q9BWS9 393 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 APOL3O95236 402 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 UMPSP11172 480 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 VCLP18206 1134 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 PHKA1P46020 1223 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 TKFCQ3LXA3 575 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 OLFML1Q6UWY5 402 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 SMIM5Q71RC9 77 aa7.4□□□□□ -1.22
VPS53-204ENST00000437048 LRRC40Q9H9A6 602 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms