RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GAD2Q05329 585 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 EOGTQ5NDL2 527 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 N4BP2L1Q5TBK1 243 aaPredicted RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 EMC10Q5UCC4 262 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 PSAPL1Q6NUJ1 521 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 RHBDF2Q6PJF5 856 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 TMEM92Q6UXU6 159 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 RASSF3Q86WH2 238 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 BBS7Q8IWZ6 715 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 ADGRG2Q8IZP9 1017 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 SLC2A14Q8TDB8 520 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 WHAMMQ8TF30 809 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 PIGKQ92643 395 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 PAGE5Q96GU1 130 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 VRTNQ9H8Y1 702 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 ANGPTL2Q9UKU9 493 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 FRMD4BQ9Y2L6 1034 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 ATXN2Q99700 1313 aaKnown RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 A0A1B0GVL5 298 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 TCRBV21S2A2A0A5A6 115 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 E2F8A0AVK6 867 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 LNP1A1A4G5 178 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 TBC1D3BA6NDS4 549 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 C4orf47A7E2U8 309 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 KHNYNO15037 678 aaKnown RBP15.36■□□□□ 0.05
SDC1-204ENST00000429035 SLFN14P0C7P3 912 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 TRIM21P19474 475 aaKnown RBP15.36■□□□□ 0.05
SDC1-204ENST00000429035 GRIA2P42262 883 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 PI4KAP42356 2102 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 NOVA1P51513 510 aaKnown RBP15.36■□□□□ 0.05
SDC1-204ENST00000429035 PAQR9Q6ZVX9 377 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 FUKQ8N0W3 1084 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 IL17RCQ8NAC3 791 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 ERLEC1Q96DZ1 483 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 ZFRQ96KR1 1074 aaKnown RBP15.36■□□□□ 0.05
SDC1-204ENST00000429035 IMPG2Q9BZV3 1241 aa15.36■□□□□ 0.05
SDC1-204ENST00000429035 ADAMTS9Q9P2N4 1935 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 PATE3B3GLJ2 98 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 TNFRSF10BO14763 440 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 MAP3K13O43283 966 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 CALUO43852 315 aaPredicted RBP15.35■□□□□ 0.05
SDC1-204ENST00000429035 TLR5O60602 858 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 BEST1O76090 585 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 KCNK5O95279 499 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 HLA-DRAP01903 254 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 FAM200BP0CF97 657 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 WASP42768 502 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 UAP1L1Q3KQV9 507 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 ZACNQ401N2 412 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 C10orf76Q5T2E6 689 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 ATL3Q6DD88 541 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 ZNF513Q8N8E2 541 aaPredicted RBP15.35■□□□□ 0.05
SDC1-204ENST00000429035 KIAA1958Q8N8K9 716 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 C12orf29Q8N999 325 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 ZMIZ2Q8NF64 920 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 WBP2Q969T9 261 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 CCDC47Q96A33 483 aaKnown RBP15.35■□□□□ 0.05
SDC1-204ENST00000429035 OTUB2Q96DC9 234 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 SMOQ99835 787 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 TLR8Q9NR97 1041 aaKnown RBP15.35■□□□□ 0.05
SDC1-204ENST00000429035 GON4LQ3T8J9 2241 aa15.35■□□□□ 0.05
SDC1-204ENST00000429035 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 NEDD8-MDP1E9PL57 170 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TULP3O75386 442 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 KIF20AO95235 890 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 RPN1P04843 607 aaKnown RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 PRR29P0C7W0 189 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TRIM49P0CI25 452 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TRIM49CP0CI26 452 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 PDIA4P13667 645 aaKnown RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 CD58P19256 250 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TUBP50607 506 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 GOLGA8FQ08AF8 430 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 GOLGA8DPQ0D2H9 430 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 SGSM1Q2NKQ1 1148 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 HSF5Q4G112 596 aaPredicted RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 DAB2IPQ5VWQ8 1189 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 SV2AQ7L0J3 742 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 LPCAT2Q7L5N7 544 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 GPRIN1Q7Z2K8 1008 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 SLC9A9Q8IVB4 645 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TMEFF1Q8IYR6 380 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 LSM14BQ9BX40 385 aaKnown RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 KCTD10Q9H3F6 313 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 FBXO44Q9H4M3 255 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 TMEM9BQ9NQ34 198 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 SPHK2Q9NRA0 654 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 DNAJC17Q9NVM6 304 aaKnown RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 DMAC2Q9NW81 257 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 DEC1Q9P2X7 70 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 LSM7Q9UK45 103 aaKnown RBP15.34■□□□□ 0.05
SDC1-204ENST00000429035 EPG5Q9HCE0 2579 aa15.34■□□□□ 0.05
SDC1-204ENST00000429035 PDXKO00764 312 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 MDM4O15151 490 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 CYP26A1O43174 497 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 HOXC11O43248 304 aaPredicted RBP15.33■□□□□ 0.04
SDC1-204ENST00000429035 HOXB2P14652 356 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 PMLP29590 882 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TNFRSF4P43489 277 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 KIR2DL1P43626 348 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms