RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 TRIM5Q9C035 493 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 TMPRSS5Q9H3S3 457 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 ARFGAP3Q9NP61 516 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 GJB4Q9NTQ9 266 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 FOXJ2Q9P0K8 574 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 DKK3Q9UBP4 350 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 SH2B3Q9UQQ2 575 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 FER1L4A9Z1Z3 1794 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 RAD54L2Q9Y4B4 1467 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 SALL3Q9BXA9 1300 aa3.14□□□□□ -1.91
VPS41-206ENST00000418457 VIRMAQ69YN4 1812 aaKnown RBP3.14□□□□□ -1.91
VPS41-206ENST00000418457 USP47Q96K76 1375 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ERCC6L2Q5T890 1561 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 EIF2AK4Q9P2K8 1649 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 ZAR1LA6NP61 321 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 PSMD9O00233 223 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 AKAP8O43823 692 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 VNN1O95497 513 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 TTLL1O95922 423 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 SLPIP03973 132 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ERBB2P04626 1255 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 FESP07332 822 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 IL6RP08887 468 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 HGFP14210 728 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 IDEP14735 1019 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 NDUFB7P17568 137 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 TYRP1P17643 537 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ABCB4P21439 1286 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 UQCRC1P31930 480 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 LIPAP38571 399 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 PGDP52209 483 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 COPAP53621 1224 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 PDE1AP54750 535 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 RRP1P56182 461 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 SIM1P81133 766 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 KCNAB1Q14722 419 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 LY6KQ17RY6 165 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 SLC35G1Q2M3R5 365 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 DGKKQ5KSL6 1271 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 USP17L6PQ6QN14 398 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 CRTC1Q6UUV9 634 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ZNF551Q7Z340 670 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 CAND1Q86VP6 1230 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 LRRC71Q8N4P6 559 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 CAGE1Q8TC20 777 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 PNISRQ8TF01 805 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 XAGE5Q8WWM1 108 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ZNF566Q969W8 418 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 R3HDM4Q96D70 268 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 SLC39A13Q96H72 371 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 RPS6KC1Q96S38 1066 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 DPCDQ9BVM2 203 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 INO80BQ9C086 356 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 ZCWPW1Q9H0M4 648 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 ARHGEF3Q9NR81 526 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 CCNL1Q9UK58 526 aaPredicted RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 USP22Q9UPT9 525 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 HPSEQ9Y251 543 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 MAN2B2Q9Y2E5 1009 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 PCDHGB2Q9Y5G2 931 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 SHANK2Q9UPX8 1470 aa3.13□□□□□ -1.91
VPS41-206ENST00000418457 WDR33Q9C0J8 1336 aaKnown RBP3.13□□□□□ -1.91
VPS41-206ENST00000418457 ADAMTS12P58397 1594 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 CEP170Q5SW79 1584 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 RAPGEF6Q8TEU7 1601 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 CCDC144AA2RUR9 1427 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 ABCC5O15440 1437 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 PZPP20742 1482 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 A0A087WZ62 844 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 LINC00473A8K010 186 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 GCOM1H8Y6P7 765 aaPredicted RBP3.12□□□□□ -1.91
VPS41-206ENST00000418457 SNX2O60749 519 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 PEX14O75381 377 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 NDST3O95803 873 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 PRKCBP05771 671 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 EBLN1P0CF75 366 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 SETSIPP0DME0 302 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 PROZP22891 400 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 EEF1GP26641 437 aaKnown RBP3.12□□□□□ -1.91
VPS41-206ENST00000418457 PCSK6P29122 969 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 ATICP31939 592 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 TECP42680 631 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 HSPA7P48741 367 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 RARRES1P49788 294 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 GATMP50440 423 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 TPTEP56180 551 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 TIAL1Q01085 375 aaKnown RBP eCLIP3.12□□□□□ -1.91
VPS41-206ENST00000418457 BIRC2Q13490 618 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 MORC3Q14149 939 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 MPEG1Q2M385 716 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 FAM153CQ494X1 144 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 CCDC184Q52MB2 194 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 LCE5AQ5TCM9 118 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 MANEALQ5VSG8 457 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 ANKRD16Q6P6B7 361 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 FBXO38Q6PIJ6 1188 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 WDR53Q7Z5U6 358 aaPredicted RBP3.12□□□□□ -1.91
VPS41-206ENST00000418457 GRASPQ7Z6J2 395 aaPredicted RBP3.12□□□□□ -1.91
VPS41-206ENST00000418457 SYTL1Q8IYJ3 562 aa3.12□□□□□ -1.91
VPS41-206ENST00000418457 SPICE1Q8N0Z3 855 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms