RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ACSL3O95573 720 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CXCL8P10145 99 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CD19P15391 556 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 BMPR1AP36894 532 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CDKN2BP42772 138 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CLCN3P51790 818 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 RAD23BP54727 409 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 NR1H3Q13133 447 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 BTG3Q14201 252 aaPredicted RBP15.5■□□□□ 0.07
USP4-203ENST00000415188 MORF4L2Q15014 288 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 LLGL1Q15334 1064 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 TRIP13Q15645 432 aaPredicted RBP15.5■□□□□ 0.07
USP4-203ENST00000415188 TAZQ16635 292 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 ZFYVE27Q5T4F4 411 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 DAB2IPQ5VWQ8 1189 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 DENND1BQ6P3S1 775 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 SCARA5Q6ZMJ2 495 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CCDC121Q6ZUS5 278 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 CRIPAKQ8N1N5 446 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 TMEM40Q8WWA1 233 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 ZNF317Q96PQ6 595 aaPredicted RBP15.5■□□□□ 0.07
USP4-203ENST00000415188 FTHL17Q9BXU8 183 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 PCDH9Q9HC56 1237 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 KIAA1257Q9ULG3 409 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 SHOC2Q9UQ13 582 aa15.5■□□□□ 0.07
USP4-203ENST00000415188 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 F8VP50 259 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 SMAPO00193 183 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 B4GALT5O43286 388 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 MGEA5O60502 916 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 CDH16O75309 829 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 GJB6O95452 261 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 VTNP04004 478 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 STAG3L1P0CL83 205 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 KRT3P12035 628 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 ATF7P17544 494 aaPredicted RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 PSMA2P25787 234 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 GABRB2P47870 512 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 GATMP50440 423 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 OGDHQ02218 1023 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 OASLQ15646 514 aaKnown RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 CNGA2Q16280 664 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 AMHR2Q16671 573 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 KIZQ2M2Z5 673 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 PTPN20Q4JDL3 420 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 TCEAL5Q5H9L2 206 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 APBB1IPQ7Z5R6 666 aaPredicted RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 ANKS1BQ7Z6G8 1248 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 PCGF5Q86SE9 256 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 NPAS4Q8IUM7 802 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 C1orf127Q8N9H9 656 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 MDM1Q8TC05 714 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 CABS1Q96KC9 395 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 CFAP57Q96MR6 1250 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 PDZD7Q9H5P4 517 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 IFT122Q9HBG6 1241 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 NXF1Q9UBU9 619 aaKnown RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 ITGA11Q9UKX5 1188 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 TPX2Q9ULW0 747 aaKnown RBP15.49■□□□□ 0.07
USP4-203ENST00000415188 POLIQ9UNA4 740 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 ZNF148Q9UQR1 794 aa15.49■□□□□ 0.07
USP4-203ENST00000415188 LACTBL1A8MY62 500 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 C5orf67F2Z3F1 127 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 GRM6O15303 877 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 CILPO75339 1184 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 CSPG5O95196 566 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 NFICP08651 508 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 KRT19P08727 400 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 VDRP11473 427 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 KCNA5P22460 613 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 SLCO1A2P46721 670 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 PSMC1P62191 440 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 SLC25A11Q02978 314 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 ITIH4Q14624 930 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 STILQ15468 1287 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 P3H1Q32P28 736 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 PAN2Q504Q3 1202 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 TIGD5Q53EQ6 642 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 ZNF394Q53GI3 561 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 UBAP2Q5T6F2 1119 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 SCARA3Q6AZY7 606 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 EXOC3L1Q86VI1 746 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 ANKS4BQ8N8V4 417 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 UHMK1Q8TAS1 419 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 SLC35B2Q8TB61 432 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 ARHGEF2Q92974 986 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 CLP1Q92989 425 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 OSMRQ99650 979 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 MINDY3Q9H8M7 445 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 DNPEPQ9ULA0 475 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 C2CD2Q9Y426 696 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 MRPL42Q9Y6G3 142 aaKnown RBP15.48■□□□□ 0.07
USP4-203ENST00000415188 BDP1A6H8Y1 2624 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 MYO7AQ13402 2215 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 CITO14578 2027 aa15.48■□□□□ 0.07
USP4-203ENST00000415188 GOLGA6L7A0A1B0GV03 622 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 LRRD1A4D1F6 860 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 PI4K2BG5E9Z4 385 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 GPR32O75388 356 aa15.47■□□□□ 0.07
USP4-203ENST00000415188 RB1P06400 928 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms