RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ABL1P00519 1130 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 PDGFBP01127 241 aaPredicted RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 GLI1P08151 1106 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 MBL2P11226 248 aaPredicted RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 CD58P19256 250 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 ACO1P21399 889 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 MTIF2P46199 727 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 RPL34P49207 117 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 GPR15P49685 360 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 VCPP55072 806 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 MRPS21P82921 87 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 PTK2Q05397 1052 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 PDE4CQ08493 712 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TCF15Q12870 199 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 GRM2Q14416 872 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 SKOR2Q2VWA4 1001 aaPredicted RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 EML3Q32P44 896 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 IER5LQ5T953 404 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 BTBD8Q5XKL5 378 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 SPOPLQ6IQ16 392 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TRIM65Q6PJ69 517 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TMEM270Q6UE05 265 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 SCARA5Q6ZMJ2 495 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 C11orf74Q86VG3 221 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 ZDHHC17Q8IUH5 632 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 UBR7Q8N806 425 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 C12orf29Q8N999 325 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 ZMIZ2Q8NF64 920 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 SLC35F5Q8WV83 523 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 ATRIPQ8WXE1 791 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 GOLGA1Q92805 767 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 ERCC4Q92889 916 aaPredicted RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 SECISBP2LQ93073 1101 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 EEF2KMTQ96G04 330 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 NOX5Q96PH1 765 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 XPO6Q96QU8 1125 aaKnown RBP6.73□□□□□ -1.33
USP54-202ENST00000413442 MED15Q96RN5 788 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 CYP2S1Q96SQ9 504 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 P2RY13Q9BPV8 354 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TUBGCP2Q9BSJ2 902 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 SLC2A11Q9BYW1 496 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 RNF38Q9H0F5 515 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 NDST4Q9H3R1 872 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TRPC7Q9HCX4 862 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 KRT82Q9NSB4 513 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.73□□□□□ -1.33
USP54-202ENST00000413442 ZSCAN32Q9NX65 697 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 APEX2Q9UBZ4 518 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 STRIP2Q9ULQ0 834 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 CTNND2Q9UQB3 1225 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 PCDHB4Q9Y5E5 795 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 TRIOO75962 3097 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 COL4A2P08572 1712 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 MUC3AQ02505 3323 aa6.73□□□□□ -1.33
USP54-202ENST00000413442 C2orf78A6NCI8 922 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SMTNL1A8MU46 457 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 O00370 1275 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 COCHO43405 550 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 TIMM44O43615 452 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 TADA3O75528 432 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CCDC172P0C7W6 258 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 RARGP13631 454 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CCDC130P13994 396 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CD19P15391 556 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SDHBP21912 280 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 TARSP26639 723 aaKnown RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 ADORA2BP29275 332 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 GJA4P35212 333 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 RAP1GAPP47736 663 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 GALK1P51570 392 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 STX17P56962 302 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 USP46P62068 366 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 RING1Q06587 406 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 NNTQ13423 1086 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CCINQ13939 588 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 VWA3BQ502W6 1294 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PKDCCQ504Y2 493 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 ZNF394Q53GI3 561 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 MPP7Q5T2T1 576 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 STXBP5Q5T5C0 1151 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SDHAF4Q5VUM1 108 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 TRMT11Q7Z4G4 463 aaKnown RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 PIGZQ86VD9 579 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 ZNF677Q86XU0 584 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 UNC45BQ8IWX7 931 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 ZBTB44Q8NCP5 570 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PRSS33Q8NF86 280 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SCAMP5Q8TAC9 235 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 RNF139Q8WU17 664 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 ZNF606Q8WXB4 792 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CD101Q93033 1021 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 NKD2Q969F2 451 aaPredicted RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 ACDQ96AP0 544 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 RSPRY1Q96DX4 576 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 FAM84AQ96KN4 292 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 CNOT6LQ96LI5 555 aaKnown RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 LRRC3BQ96PB8 259 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PPP1R9BQ96SB3 815 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PNKPQ96T60 521 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 DDX50Q9BQ39 737 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms