RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RNF225M0QZC1 329 aaPredicted RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 FOXN3O00409 490 aaPredicted RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 SRFP11831 508 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 GLULP15104 373 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 AOC1P19801 751 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 HNRNPH3P31942 346 aaKnown RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 ELF1P32519 619 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 VIPR2P41587 438 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 WDR4P57081 412 aaKnown RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 POLR2FP61218 127 aaKnown RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 DRAP1Q14919 205 aaPredicted RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 MAPRE1Q15691 268 aaKnown RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 CFAP221Q4G0U5 840 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ARHGAP17Q68EM7 881 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 LRRTM3Q86VH5 581 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ATAD1Q8NBU5 361 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 B3GALNT2Q8NCR0 500 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 OR6B3Q8NGW1 331 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ZNF461Q8TAF7 563 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 OLIG1Q8TAK6 271 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 MYCBPAPQ8TBZ2 947 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 C2orf15Q8WU43 125 aaKnown RBP9.74□□□□□ -0.85
VPS53-203ENST00000401468 HDAC7Q8WUI4 952 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 TMEM176AQ96HP8 235 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 FUBP3Q96I24 572 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS53-203ENST00000401468 TNIP3Q96KP6 325 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 SYT15Q9BQS2 421 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ZSWIM1Q9BR11 485 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 NT5C1AQ9BXI3 368 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ELOVL4Q9GZR5 314 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 SNX25Q9H3E2 840 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 DPEP3Q9H4B8 488 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ABCB6Q9NP58 842 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.74□□□□□ -0.851e-6■■■■■ 243.8
VPS53-203ENST00000401468 ARHGEF3Q9NR81 526 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS53-203ENST00000401468 IGSF9Q9P2J2 1179 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 DPP7Q9UHL4 492 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 KIAA1257Q9ULG3 409 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.74□□□□□ -0.854e-6■■■□□ 17.1
VPS53-203ENST00000401468 ZNF292O60281 2723 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 EP300Q09472 2414 aaPredicted RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 MTMR11A4FU01 709 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 ADH1CP00326 375 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 HNRNPA1P09651 372 aaKnown RBP eCLIP9.73□□□□□ -0.85
VPS53-203ENST00000401468 ATF2P15336 505 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 PTPN1P18031 435 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 TRIM21P19474 475 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 HOXC13P31276 330 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 SOX5P35711 763 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 DUSP4Q13115 394 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 UBXN2BQ14CS0 331 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 ANGPT1Q15389 498 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 TEAD2Q15562 447 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 NFE2Q16621 373 aaPredicted RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 FAM78AQ5JUQ0 283 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 SDHAF4Q5VUM1 108 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 TMEM270Q6UE05 265 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 PAQR9Q6ZVX9 377 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 IRF2BP2Q7Z5L9 587 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 FMNL3Q8IVF7 1028 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 DCP1BQ8IZD4 617 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 DTWD2Q8NBA8 298 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 RBBP8NLQ8NC74 664 aaPredicted RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 DDX1Q92499 740 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 CEP295NLQ96MC4 621 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 DNAJC7Q99615 494 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 HNRNPABQ99729 332 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 LPIN3Q9BQK8 851 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 SYT11Q9BT88 431 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 SMG9Q9H0W8 520 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 NUCKS1Q9H1E3 243 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 ZNF334Q9HCZ1 680 aaPredicted RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 HEBP1Q9NRV9 189 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 TMLHEQ9NVH6 421 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 AFF4Q9UHB7 1163 aaKnown RBP9.73□□□□□ -0.85
VPS53-203ENST00000401468 YIPF1Q9Y548 306 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 DNAH14Q0VDD8 3507 aa9.73□□□□□ -0.85
VPS53-203ENST00000401468 A0A1W2PRU2 124 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 MYBPHLA2RUH7 354 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 O00370 1275 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ATP2C2O75185 946 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 MOSPD3O75425 235 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ADCY5O95622 1261 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 POU2F2P09086 479 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 PDGFRBP09619 1106 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 VDRP11473 427 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 PTPN2P17706 415 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 CD58P19256 250 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 FCARP24071 287 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ACAT1P24752 427 aaKnown RBP9.72□□□□□ -0.85
VPS53-203ENST00000401468 PRKCIP41743 596 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 MAGEA11P43364 429 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 GPR15P49685 360 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 ZBED6P86452 979 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 TSPY1Q01534 308 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 STILQ15468 1287 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 SLC39A12Q504Y0 691 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 PRSS36Q5K4E3 855 aa9.72□□□□□ -0.85
VPS53-203ENST00000401468 E4F1Q66K89 784 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms