RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 FBXO2Q9UK22 296 aaPredicted RBP17.13■□□□□ 0.33
CUX2-202ENST00000397643 ADAMTS20P59510 1910 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 ARHGAP33O14559 1287 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 TRIM24O15164 1050 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 COCHO43405 550 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 TACC1O75410 805 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 GJB3O75712 270 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 PRPF6O94906 941 aaKnown RBP17.12■□□□□ 0.33
CUX2-202ENST00000397643 TNNC2P02585 160 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 ATXN3P54252 364 aaPredicted RBP17.12■□□□□ 0.33
CUX2-202ENST00000397643 GAD2Q05329 585 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 ZNF33AQ06730 810 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 DUOXA2Q1HG44 320 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 ZNF423Q2M1K9 1284 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 TDRD10Q5VZ19 366 aaKnown RBP17.12■□□□□ 0.33
CUX2-202ENST00000397643 NAT16Q8N8M0 369 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 TERB1Q8NA31 727 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 GLIS3Q8NEA6 775 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 WBP2Q969T9 261 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 OTUB2Q96DC9 234 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 SLITRK1Q96PX8 696 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 DUSP9Q99956 384 aaKnown RBP17.12■□□□□ 0.33
CUX2-202ENST00000397643 CFAP45Q9UL16 551 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 GPSM3Q9Y4H4 160 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 ACACAQ13085 2346 aa17.12■□□□□ 0.33
CUX2-202ENST00000397643 TBC1D3BA6NDS4 549 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 IDEP14735 1019 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 GNL1P36915 607 aaPredicted RBP17.11■□□□□ 0.33
CUX2-202ENST00000397643 RRAGBQ5VZM2 374 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 SLC36A4Q6YBV0 504 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 SV2BQ7L1I2 683 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 HS2ST1Q7LGA3 356 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 TRAPPC11Q7Z392 1133 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 TRMT11Q7Z4G4 463 aaKnown RBP17.11■□□□□ 0.33
CUX2-202ENST00000397643 WDR49Q8IV35 697 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 BBS7Q8IWZ6 715 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 CAMK1GQ96NX5 476 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 CLIC6Q96NY7 704 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 MMS19Q96T76 1030 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 B3GNT5Q9BYG0 378 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 ELOVL4Q9GZR5 314 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 CCDC39Q9UFE4 941 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 STARD13Q9Y3M8 1113 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 CLIC4Q9Y696 253 aa17.11■□□□□ 0.33
CUX2-202ENST00000397643 A0A087X0B3 334 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 ZNF233A6NK53 670 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 CLDN5O00501 218 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 KIAA0391O15091 583 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 CST3P01034 146 aaPredicted RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 HOXB2P14652 356 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 PTPN1P18031 435 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 YWHAQP27348 245 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 NTSR1P30989 418 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 HOXD13P35453 343 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 WASP42768 502 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 CEBPZQ03701 1054 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 DNM1Q05193 864 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 IFRD2Q12894 506 aaPredicted RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 C10orf76Q5T2E6 689 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 SNX30Q5VWJ9 437 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 EGFLAMQ63HQ2 1017 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 RABEPKQ7Z6M1 372 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 TMEM25Q86YD3 366 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 OVCA2Q8WZ82 227 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 USP28Q96RU2 1077 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 ACOX2Q99424 681 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 SNX25Q9H3E2 840 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 CD93Q9NPY3 652 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 IL37Q9NZH6 218 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 DEC1Q9P2X7 70 aa17.1■□□□□ 0.33
CUX2-202ENST00000397643 TFIP11Q9UBB9 837 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 R3HCC1Q9Y3T6 440 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 SRPRBQ9Y5M8 271 aaKnown RBP17.1■□□□□ 0.33
CUX2-202ENST00000397643 PLXNB3Q9ULL4 1909 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 A0A1W2PQD8 194 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 SH3BP5O60239 455 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 GREM1O60565 184 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 NDUFV2P19404 249 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 KRT85P78386 507 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 SCAPQ12770 1279 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 HNRNPDQ14103 355 aaKnown RBP17.09■□□□□ 0.33
CUX2-202ENST00000397643 SURF1Q15526 300 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 NUP93Q8N1F7 819 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 TRIML1Q8N9V2 468 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 B3GALNT2Q8NCR0 500 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 PDZD8Q8NEN9 1154 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 OR6B3Q8NGW1 331 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 SCAMP5Q8TAC9 235 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 ADAMTS14Q8WXS8 1223 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 FBXO32Q969P5 355 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 HSPA12BQ96MM6 686 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 GZF1Q9H116 711 aaPredicted RBP17.09■□□□□ 0.33
CUX2-202ENST00000397643 CCSER2Q9H7U1 834 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 SPHK2Q9NRA0 654 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 PANK4Q9NVE7 773 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 HSPBP1Q9NZL4 362 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 CYP8B1Q9UNU6 501 aa17.09■□□□□ 0.33
CUX2-202ENST00000397643 GCN1Q92616 2671 aaKnown RBP17.09■□□□□ 0.33
CUX2-202ENST00000397643 FAM92AA1XBS5 289 aa17.08■□□□□ 0.32
CUX2-202ENST00000397643 RTN3O95197 1032 aaPredicted RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms