RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NECAB2Q7Z6G3 386 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ZNF677Q86XU0 584 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 CCDC126Q96EE4 140 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SGSM3Q96HU1 749 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ATP6V1G3Q96LB4 118 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 BBS4Q96RK4 519 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FBXO44Q9H4M3 255 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 UXTQ9UBK9 157 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 SNX8Q9Y5X2 465 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 EFCAB6Q5THR3 1501 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 IFNA16P05015 189 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 PDHBP11177 359 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 VDRP11473 427 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ITGAXP20702 1163 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SP100P23497 879 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 GRK4P32298 578 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 GGCXP38435 758 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 BACE1P56817 501 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FUT11Q495W5 492 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 LRRC8DQ7L1W4 858 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SLFN11Q7Z7L1 901 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FAM131BQ86XD5 332 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 LPCAT1Q8NF37 534 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 MED8Q96G25 268 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SERAC1Q96JX3 654 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 BTBD9Q96Q07 612 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 THTPAQ9BU02 230 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 UBE2OQ9C0C9 1292 aaKnown RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 ILKAPQ9H0C8 392 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 ZNF711Q9Y462 761 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ARHGEF12Q9NZN5 1544 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 VGLL3A8MV65 326 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SMIM22K7EJ46 135 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TSPAN3O60637 253 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 STAU1O95793 577 aaKnown RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 RPA1P27694 616 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 NDUFV1P49821 464 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 RENBPP51606 427 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 E2F4Q16254 413 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 KBTBD12Q3ZCT8 623 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SLC25A24Q6NUK1 477 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 GAS2L3Q86XJ1 694 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ZNF557Q8N988 423 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 MKNK1Q9BUB5 465 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 IL1RAPL1Q9NZN1 696 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ARL2BPQ9Y2Y0 163 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 RAD54BQ9Y620 910 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 STON1Q9Y6Q2 735 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 PRR36Q9H6K5 1346 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ANKRD65E5RJM6 399 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PDE2AO00408 941 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 RAMP2O60895 175 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PHF2O75151 1096 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MAP3K6O95382 1288 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 GLP2RO95838 553 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 UQCRBP14927 111 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CYP2A7P20853 494 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TALDO1P37837 337 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CAP2P40123 477 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 NUDT2P50583 147 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 COPZ1P61923 177 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ATP6AP1LQ52LC2 224 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SBK1Q52WX2 424 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MARC1Q5VT66 337 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TYW3Q6IPR3 259 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 MPZL3Q6UWV2 235 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ZNF655Q8N720 491 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 SPATA4Q8NEY3 305 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 E2F7Q96AV8 911 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ACSF2Q96CM8 615 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 CLIP3Q96DZ5 547 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PGLYRP2Q96PD5 576 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 APOL2Q9BQE5 337 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SHCBP1LQ9BZQ2 653 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 YIPF3Q9GZM5 350 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ROGDIQ9GZN7 287 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 RHBGQ9H310 441 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PRKAG3Q9UGI9 489 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MKL2Q9ULH7 1088 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 DRG1Q9Y295 367 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 MRPS23Q9Y3D9 190 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 PCDHB9Q9Y5E1 797 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CARNS1A5YM72 827 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 FAM220BPB1ANY3 271 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TMEM114B3SHH9 223 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 DDNO94850 711 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 AGTP01019 485 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ICAM1P05362 532 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 POLR2EP19388 210 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 LSP1P33241 339 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 POLR2LP62875 67 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 PABPC1LQ4VXU2 614 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 FAAH2Q6GMR7 532 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 C11orf88Q6PI97 169 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 DENND6AQ8IWF6 608 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 FAM20CQ8IXL6 584 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SIX5Q8N196 739 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TRPC4APQ8TEL6 797 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 GAS2L1Q99501 681 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 GINS4Q9BRT9 223 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms