RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TMEM191CA6NGB0 347 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 FEN1P39748 380 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ZCCHC11Q5TAX3 1644 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 RPL10AP62906 217 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 NFIXQ14938 502 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF484Q5JVG2 852 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 VN1R5Q7Z5H4 357 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 TRPM1Q7Z4N2 1603 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 IFRD1O00458 451 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 RCN1Q15293 331 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CDC42EP5Q6NZY7 148 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 MTSS1LQ765P7 747 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 DPF2Q92785 391 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 AHSPQ9NZD4 102 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 HPS5Q9UPZ3 1129 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 SMIM31A0A1B0GVY4 71 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM220BPB1ANY3 271 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 TM9SF1O15321 606 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 PLA2G6O60733 806 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 PREPLQ4J6C6 727 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ANGEL2Q5VTE6 544 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 IRAK1BP1Q5VVH5 260 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 TAF2Q6P1X5 1199 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 MIER2Q8N344 545 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM151AQ8WW52 585 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 GLT1D1Q96MS3 346 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 KCTD14Q9BQ13 255 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ADI1Q9BV57 179 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 TRPM5Q9NZQ8 1165 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 DLGAP2Q9P1A6 1054 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 TRIM10Q9UDY6 481 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CNPP09543 421 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 GRK4P32298 578 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CPA2P48052 419 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CCT8P50990 548 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 AMPD2Q01433 879 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 IGDCC4Q8TDY8 1250 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 IARS2Q9NSE4 1012 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 KLHL28Q9NXS3 571 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF682O95780 498 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CLTBP09497 229 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 VDRP11473 427 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 SCUBE1Q8IWY4 988 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 OR8H2Q8N162 312 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 SPIRE2Q8WWL2 714 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF512BQ96KM6 892 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 CENPXA8MT69 81 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 GLP2RO95838 553 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 GYS1P13807 737 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ATP6V1B2P21281 511 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 BCAT1P54687 386 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 EPHB3P54753 998 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 PLD1Q13393 1074 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 ASZ1Q8WWH4 475 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 FANCEQ9HB96 536 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 TBC1D13Q9NVG8 400 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 KLHL3Q9UH77 587 aa13.19□□□□□ -0.3
CCDC88C-204ENST00000389857 NR5A2O00482 541 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 MAD2L1Q13257 205 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 LRRC6Q86X45 466 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 SLC13A5Q86YT5 568 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 KLHL4Q9C0H6 718 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 GANQ9H2C0 597 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 INTS13Q9NVM9 706 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF839A8K0R7 811 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM25AB3EWG3 89 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM25CB3EWG5 89 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM25GB3EWG6 89 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 C11orf88Q6PI97 169 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ADGRF2Q8IZF7 708 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ANKS1AQ92625 1134 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 SGF29Q96ES7 293 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 KCNH7Q9NS40 1196 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 MPOP05164 745 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 RPS12P25398 132 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 CHRNA5P30532 468 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 DDR2Q16832 855 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 PRMT9Q6P2P2 845 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 TDRD5Q8NAT2 981 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 WDR36Q8NI36 951 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 HDHD2Q9H0R4 259 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ENOPH1Q9UHY7 261 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 DNAJC3Q13217 504 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 PTGISQ16647 500 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ZCWPW2Q504Y3 356 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ZSWIM1Q9BR11 485 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 SLC40A1Q9NP59 571 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 PRR36Q9H6K5 1346 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 LHX1P48742 406 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 SARSP49591 514 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 GTF2A2P52657 109 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ITIH5Q86UX2 942 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 B3GALNT2Q8NCR0 500 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 SERAC1Q96JX3 654 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 DPP7Q9UHL4 492 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 POLG2Q9UHN1 485 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 ENO4A6NNW6 628 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 CKBP12277 381 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 NFIL3Q16649 462 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms