RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GOLGA2P5Q9HBQ8 144 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PSMC3IPQ9P2W1 217 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 MORF4L1Q9UBU8 362 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 MFHAS1Q9Y4C4 1052 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 MCF2LO15068 1137 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PDGFRBP09619 1106 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 RBL1P28749 1068 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 KCNJ2P63252 427 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 SLC6A3Q01959 620 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ROR1Q01973 937 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 SOX4Q06945 474 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ADGRD1Q6QNK2 874 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 NDRG1Q92597 394 aaKnown RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 TINF2Q9BSI4 451 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 C11orf84Q9BUA3 381 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 APOL6Q9BWW8 343 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 FLRT1Q9NZU1 646 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 NUMBLQ9Y6R0 609 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 DPYSL4O14531 572 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 PRPSAP2O60256 369 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 CCNA1P78396 465 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ELF3P78545 371 aaPredicted RBP13.95□□□□□ -0.18
CCDC3-202ENST00000378839 C9orf57Q5W0N0 161 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ZNF410Q86VK4 478 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 ACSS3Q9H6R3 686 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 SLC24A2Q9UI40 661 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 HEY1Q9Y5J3 304 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 TEX264Q9Y6I9 313 aa13.95□□□□□ -0.18
CCDC3-202ENST00000378839 FAM155BO75949 473 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SMIM10L2AP0DMW4 78 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SMIM10L2BP0DMW5 78 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 DPY19L2Q6NUT2 758 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 PPP1R21Q6ZMI0 780 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 CEP128Q6ZU80 1094 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SGSM3Q96HU1 749 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SLC17A7Q9P2U7 560 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 ARL2BPQ9Y2Y0 163 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 RECQL4O94761 1208 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 BNIP1Q12981 228 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 RASA2Q15283 850 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 DGKDQ16760 1214 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 KYAT1Q16773 422 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SLC9A4Q6AI14 798 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 SLC27A1Q6PCB7 646 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 ATP11CQ8NB49 1132 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 NETO2Q8NC67 525 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 ARRDC4Q8NCT1 418 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 MTMR10Q9NXD2 777 aa13.94□□□□□ -0.18
CCDC3-202ENST00000378839 TCRBV9S1A1TA0A576 114 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KBTBD13C9JR72 458 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 H7C0C1 242 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KCNN4O15554 427 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 DYNC1LI2O43237 492 aaPredicted RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 STRNO43815 780 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SUN1O94901 812 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 ADRA1DP25100 572 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 ATP5OP48047 213 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SH2D5Q6ZV89 423 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CATSPER4Q7RTX7 472 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CCDC91Q7Z6B0 441 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CCDC63Q8NA47 563 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 OR6B3Q8NGW1 331 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SERAC1Q96JX3 654 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SMC6Q96SB8 1091 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PITPNM3Q9BZ71 974 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SLC24A3Q9HC58 644 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KIAA1257Q9ULG3 409 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 GSTA1P08263 222 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CA4P22748 312 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 ADORA2BP29275 332 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 IL9RQ01113 521 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 GBE1Q04446 702 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 RNASELQ05823 741 aaKnown RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KRT81Q14533 505 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 LVRNQ6Q4G3 990 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 TBC1D1Q86TI0 1168 aaPredicted RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CAND1Q86VP6 1230 aaKnown RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 NT5DC4Q86YG4 428 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KIF2BQ8N4N8 673 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 DNAJB3Q8WWF6 145 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 TMPRSS4Q9NRS4 437 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CNTN3Q9P232 1028 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CACNG4Q9UBN1 327 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PHTF1Q9UMS5 762 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 RALGAPA2Q2PPJ7 1873 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CXorf49A8MYA2 514 aaPredicted RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PIRO00625 290 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 MGRN1O60291 552 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 TKTP29401 623 aaKnown RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 SLC18A1P54219 525 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 NR1H3Q13133 447 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PDK4Q16654 411 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 DCAF4L1Q3SXM0 396 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 KBTBD12Q3ZCT8 623 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PPP6R3Q5H9R7 873 aaPredicted RBP13.93□□□□□ -0.18
CCDC3-202ENST00000378839 UBXN11Q5T124 520 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CEP57Q86XR8 500 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PARP9Q8IXQ6 854 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 PYROXD2Q8N2H3 581 aa13.93□□□□□ -0.18
CCDC3-202ENST00000378839 CCDC185Q8N715 623 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms