RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 TKTL1P51854 596 aa10.13□□□□□ -0.79
COL4A6-202ENST00000372216 ELAVL2Q12926 359 aaKnown RBP10.13□□□□□ -0.79
COL4A6-202ENST00000372216 TIGD7Q6NT04 549 aaPredicted RBP10.13□□□□□ -0.79
COL4A6-202ENST00000372216 SLC27A1Q6PCB7 646 aa10.13□□□□□ -0.79
COL4A6-202ENST00000372216 ST13P4Q8IZP2 240 aaPredicted RBP10.13□□□□□ -0.79
COL4A6-202ENST00000372216 CISHQ9NSE2 258 aa10.13□□□□□ -0.79
COL4A6-202ENST00000372216 VPS28Q9UK41 221 aa10.13□□□□□ -0.79
COL4A6-202ENST00000372216 PCDHB5Q9Y5E4 795 aa10.13□□□□□ -0.79
COL4A6-202ENST00000372216 SCAMP3O14828 347 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 AKAP10O43572 662 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PTPN7P35236 360 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 FKBP1CQ5VVH2 108 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 OVOS1Q6IE37 1185 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 C3orf62Q6ZUJ4 267 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 NIPA1Q7RTP0 329 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ZNF438Q7Z4V0 828 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 BBS2Q9BXC9 721 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 WWOXQ9NZC7 414 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CAB39Q9Y376 341 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 LINC00854A0A1B0GVQ3 168 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TMEM150BA6NC51 233 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 RAD51CO43502 376 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 H2AFYO75367 372 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CPSF4O95639 269 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 GPC1P35052 558 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ALDH9A1P49189 494 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PRAMEF19Q5SWL8 479 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TEDDM1Q5T9Z0 273 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 NLRP14Q86W24 1093 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 KRT78Q8N1N4 520 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TPCN2Q8NHX9 752 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 USP13Q92995 863 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 SGF29Q96ES7 293 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PDGFDQ9GZP0 370 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 KCNF1Q9H3M0 494 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TFR2Q9UP52 801 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 MROH1Q8NDA8 1641 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CCDC22O60826 627 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 SH3BGRLO75368 114 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PLEKP08567 350 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 COILP38432 576 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 MAGEA4P43358 317 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 KCNT1Q5JUK3 1230 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CCDC81Q6ZN84 652 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ZNF410Q86VK4 478 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 RIOX2Q8IUF8 465 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ZNF669Q96BR6 464 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PGLYRP2Q96PD5 576 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 SYT15Q9BQS2 421 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CELF4Q9BZC1 486 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 RHBGQ9H310 441 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 F9P00740 461 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 AXLP30530 894 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 MED21Q13503 144 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 FAXCQ5TGI0 409 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 OTOAQ7RTW8 1153 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 SLC47A2Q86VL8 602 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ZNF555Q8NEP9 628 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TRPM4Q8TD43 1214 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CLIP3Q96DZ5 547 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CYP3A43Q9HB55 503 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 EXOSC4Q9NPD3 245 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PAPOLBQ9NRJ5 636 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 PCDHAC2Q9Y5I4 1007 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 LGALS2P05162 132 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ABCB1P08183 1280 aaPredicted RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 YWHAZP63104 245 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 DEFB115Q30KQ5 88 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TRIM69Q86WT6 500 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 C4orf33Q8N1A6 199 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 TAS1R2Q8TE23 839 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 VPS50Q96JG6 964 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 CDK5RAP1Q96SZ6 601 aaKnown RBP10.12□□□□□ -0.79
COL4A6-202ENST00000372216 LRRC4BQ9NT99 713 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 GTF3C4Q9UKN8 822 aa10.12□□□□□ -0.79
COL4A6-202ENST00000372216 ARHGEF9O43307 516 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 ACAT1P24752 427 aaKnown RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 PDK2Q15119 407 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 TSC22D1Q15714 1073 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 SHROOM1Q2M3G4 852 aaPredicted RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 UGT3A1Q6NUS8 523 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 TAF2Q6P1X5 1199 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 RPAINQ86UA6 219 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 A1CFQ9NQ94 594 aaKnown RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 SLITRK3O94933 977 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 MAPTP10636 758 aaKnown RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 KCNJ1P48048 391 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 CTCFP49711 727 aaPredicted RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 CHADLQ6NUI6 762 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 BTN2A1Q7KYR7 527 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 C16orf59Q7L2K0 433 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 OTOP1Q7RTM1 612 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 LUZP2Q86TE4 346 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 CSGALNACT1Q8TDX6 532 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 MRPL9Q9BYD2 267 aaKnown RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 RNF19AQ9NV58 838 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 SMG5Q9UPR3 1016 aaKnown RBP10.11□□□□□ -0.79
COL4A6-202ENST00000372216 LACTBL1A8MY62 500 aa10.11□□□□□ -0.79
COL4A6-202ENST00000372216 IRF6O14896 467 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms