RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 CDK8P49336 464 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 SARSP49591 514 aaKnown RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 FXR1P51114 621 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 KCNMA1Q12791 1236 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 PDK4Q16654 411 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 CYP4Z2PQ8N1L4 340 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 UHMK1Q8TAS1 419 aaKnown RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 TRIM51Q9BSJ1 452 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 NOL6Q9H6R4 1146 aaKnown RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 SUGCTQ9HAC7 445 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 TRIM39Q9HCM9 518 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 ING4Q9UNL4 249 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 ZNF862O60290 1169 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 PACS1Q6VY07 963 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 MTDHQ86UE4 582 aaKnown RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 SCAIQ8N9R8 606 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 LXNQ9BS40 222 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 UBXN6Q9BZV1 441 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 RHBDL2Q9NX52 303 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 SEC14L4Q9UDX3 406 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 RAPGEFL1Q9UHV5 662 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 NMT2O60551 498 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 PTGER2P43116 358 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 KPNA1P52294 538 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 PDXDC2PQ6P474 469 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 GDPD5Q8WTR4 605 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 GCNAQ96QF7 691 aa6.78□□□□□ -1.32
VPS13B-202ENST00000357162 FARP1Q9Y4F1 1045 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 AFDNP55196 1824 aaKnown RBP6.78□□□□□ -1.32
VPS13B-202ENST00000357162 ROBO3Q96MS0 1386 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 SPDYE2BA6NHP3 402 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 SPDYE6P0CI01 402 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 MTMR1Q13613 665 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 C12orf60Q5U649 245 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 HAUS6Q7Z4H7 955 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 MYO1HQ8N1T3 1032 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 C11orf70Q9BRQ4 267 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 EMSYQ7Z589 1322 aa6.77□□□□□ -1.32
VPS13B-202ENST00000357162 CASZ1Q86V15 1759 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 RARBP10826 455 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 NR4A1P22736 598 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ADORA1P30542 326 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CAPZA2P47755 286 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 LPIN1Q14693 890 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 GRAMD1CQ8IYS0 662 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 LRRC34Q8IZ02 419 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CASKIN2Q8WXE0 1202 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 FAXDC2Q96IV6 333 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 PABPC1P11940 636 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 HARS2P49590 506 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 GNA13Q14344 377 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CCDC157Q569K6 752 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CIAPIN1Q6FI81 312 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CREG2Q8IUH2 290 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 KATNAL2Q8IYT4 538 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ECSITQ9BQ95 431 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SYTL2Q9HCH5 934 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CCDC59Q9P031 241 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 C2CD2Q9Y426 696 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 FRMPD4Q14CM0 1322 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SPG11Q96JI7 2443 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 AIM2O14862 343 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 TPBGLP0DKB5 382 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 COMTP21964 271 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SH2D3CQ8N5H7 860 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ZNF594Q96JF6 807 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 FAM193BQ96PV7 902 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 PUS7LQ9H0K6 701 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SERHL2Q9H4I8 314 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SMURF2Q9HAU4 748 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CYP4F11Q9HBI6 524 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SERHLQ9NQF3 203 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 H2AFY2Q9P0M6 372 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 PSMD13Q9UNM6 376 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SNX3O60493 162 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 FKBP9O95302 570 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ALAS1P13196 640 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 DNAJB1P25685 340 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 INO80DQ53TQ3 878 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 INTS11Q5TA45 600 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 TRMT1LQ7Z2T5 733 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 HIPK4Q8NE63 616 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ACSS3Q9H6R3 686 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 RPAP3Q9H6T3 665 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 AKAP5P24588 427 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 PSMC6P62333 389 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 TGM3Q08188 693 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 C6orf52Q5T4I8 152 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 DHFR2Q86XF0 187 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SPATA16Q9BXB7 569 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 CHADO15335 359 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 MTRF1O75570 445 aaKnown RBP6.77□□□□□ -1.33
VPS13B-202ENST00000357162 ANKRD40Q6AI12 368 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 LARGE2Q8N3Y3 721 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 REPS1Q96D71 796 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 IFT43Q96FT9 208 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 PAFAH2Q99487 392 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 SLC13A1Q9BZW2 595 aa6.77□□□□□ -1.33
VPS13B-202ENST00000357162 HSPBP1Q9NZL4 362 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms