RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NEDD8Q15843 81 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 TAF2Q6P1X5 1199 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 RINLQ6ZS11 566 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 IQCKQ8N0W5 287 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 C5orf58C9J3I9 102 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 POU4F1Q01851 419 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 NFYCQ13952 458 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 COG2Q14746 738 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 PLEKHM3Q6ZWE6 761 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 TBC1D16Q8TBP0 767 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 NDEL1Q9GZM8 345 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 TJP2Q9UDY2 1190 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC30A1Q9Y6M5 507 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 ATP6V1B2P21281 511 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 RPA3P35244 121 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 CEP78Q5JTW2 689 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 ATF7IP2Q5U623 682 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 TRIM45Q9H8W5 580 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 ACOT9Q9Y305 439 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 ATP6V1C1P21283 382 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 FASP25445 335 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 GCLCP48506 637 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 CDC42EP5Q6NZY7 148 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 RTKN2Q8IZC4 609 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 MCOLN2Q8IZK6 566 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 SEPT1Q8WYJ6 367 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 HPDLQ96IR7 371 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 CDRT15Q96T59 188 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 C17orf75Q9HAS0 396 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 COPG2Q9UBF2 871 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 NR5A2O00482 541 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 ME2P23368 584 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 ACADSBP45954 432 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 PSMC6P62333 389 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 ORC1Q13415 861 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 XRCC4Q13426 336 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 ZCCHC23Q6ZST2 131 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 EFHBQ8N7U6 833 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 CCDC126Q96EE4 140 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 PNMA5Q96PV4 448 aa20.14■□□□□ 0.82
CCDC88B-202ENST00000356786 KBTBD13C9JR72 458 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 PGM3O95394 542 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 RNF43Q68DV7 783 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 LRRC8DQ7L1W4 858 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 DDX50Q9BQ39 737 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 IREB2P48200 963 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 FAAP100Q0VG06 881 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 MAPK11Q15759 364 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 OTUD3Q5T2D3 398 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 MOXD1Q6UVY6 613 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 LINC00523Q86TU6 105 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 ETNPPLQ8TBG4 499 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 APBB2Q92870 758 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 SPATA31A6Q5VVP1 1343 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 MYO5BQ9ULV0 1848 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 KPNA4O00629 521 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 IL18RAPO95256 599 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 RARBP10826 455 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 DMPKQ09013 629 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 RNF219Q5W0B1 726 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 ZFP1Q6P2D0 407 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 APOL2Q9BQE5 337 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 EPS8L2Q9H6S3 715 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 STMN3Q9NZ72 180 aa20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 COPG1Q9Y678 874 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 BAZ2BQ9UIF8 2168 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-202ENST00000356786 EPHB6O15197 1021 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 MYL3P08590 195 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 MPP3Q13368 585 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 PDK2Q15119 407 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 RNPEPQ9H4A4 650 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 IARS2Q9NSE4 1012 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 UBDO15205 165 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 CSPG5O95196 566 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 AADACL2Q6P093 401 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 COPS7BQ9H9Q2 264 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 USP18Q9UMW8 372 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 GPR75-ASB3A0A0A6YYF3 556 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 RHOBTB1O94844 696 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 DNPEPQ9ULA0 475 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 FCGR1AP12314 374 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 CHRM3P20309 590 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 MRPS22P82650 360 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 MGAT5Q09328 741 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 TRIM25Q14258 630 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 PRR5LQ6MZQ0 368 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 UNC45BQ8IWX7 931 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 BBS7Q8IWZ6 715 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 LRMDAQ9H2I8 198 aa20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 ATF5Q9Y2D1 282 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-202ENST00000356786 MFSD7Q6UXD7 560 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 TSHZ1Q6ZSZ6 1077 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 MARK2Q7KZI7 788 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 SNX32Q86XE0 403 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 ZNF333Q96JL9 665 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 SOAT2O75908 522 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 ALADP13716 330 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 NPTX2P47972 431 aa20.12■□□□□ 0.81
CCDC88B-202ENST00000356786 HMGCS2P54868 508 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms