RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 LRRC8BQ6P9F7 803 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 C16orf86Q6ZW13 317 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 OR8H2Q8N162 312 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 FAM172AQ8WUF8 416 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 LRCH1Q9Y2L9 728 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 COL3A1P02461 1466 aaPredicted RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 SDK1Q7Z5N4 2213 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 F8VP50 259 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 STRNO43815 780 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 GH1P01241 217 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 TSPAN8P19075 237 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 RBP5P82980 135 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 TAP1Q03518 808 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 WLSQ5T9L3 541 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SEL1L3Q68CR1 1132 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SLC26A11Q86WA9 606 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 APPL2Q8NEU8 664 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 HASPINQ8TF76 798 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 RXFP2Q8WXD0 754 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 OXNAD1Q96HP4 312 aaPredicted RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 TMEM245Q9H330 911 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 BLOC1S6Q9UL45 172 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 ATXN2Q99700 1313 aaKnown RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 TOPAZ1Q8N9V7 1692 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 F8W8V4 182 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 RHOBTB1O94844 696 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 FSBPO95073 299 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 ASMTLO95671 621 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 GRK2P25098 689 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 PSMA4P25789 261 aaKnown RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 TPP2P29144 1249 aaPredicted RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 POU4F1Q01851 419 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 ORC2Q13416 577 aaPredicted RBP8.97□□□□□ -0.97
RTN3-202ENST00000339997 TTLL4Q14679 1199 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 KRT72Q14CN4 511 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 CARTPTQ16568 116 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SBK1Q52WX2 424 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 ATF7IP2Q5U623 682 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SPOCD1Q6ZMY3 1216 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SNX32Q86XE0 403 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 FLCNQ8NFG4 579 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SPOCK2Q92563 424 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 SLC35C1Q96A29 364 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 FAM167AQ96KS9 214 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 PNMA5Q96PV4 448 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 MXRA8Q9BRK3 442 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 TEX13BQ9BXU2 312 aa8.97□□□□□ -0.97
RTN3-202ENST00000339997 ABCC3O15438 1527 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 SPDYE5A6NIY4 337 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 PGK2P07205 417 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 THRAP10827 490 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 HOXA7P31268 230 aaPredicted RBP8.96□□□□□ -0.97
RTN3-202ENST00000339997 DLG4P78352 724 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 ITGADQ13349 1161 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 ZIK1Q3SY52 487 aaPredicted RBP8.96□□□□□ -0.97
RTN3-202ENST00000339997 SPDYE7PQ495Y7 208 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 TBCELQ5QJ74 424 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 RNF220Q5VTB9 566 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 EFCAB12Q6NXP0 572 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 ZNF720Q7Z2F6 126 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 HORMAD1Q86X24 394 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 TNIP3Q96KP6 325 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 TRPC7Q9HCX4 862 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 MKL2Q9ULH7 1088 aa8.96□□□□□ -0.97
RTN3-202ENST00000339997 RBMX2Q9Y388 322 aaKnown RBP8.96□□□□□ -0.97
RTN3-202ENST00000339997 TIMM13Q9Y5L4 95 aaPredicted RBP8.96□□□□□ -0.97
RTN3-202ENST00000339997 PRR23D1E9PI22 279 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 PIK3CDO00329 1044 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 PRR23D2P0DMB1 279 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 SOAT1P35610 550 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 CHKAP35790 457 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 TDRD5Q8NAT2 981 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 HES6Q96HZ4 224 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 C6orf62Q9GZU0 229 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 CACNA2D2Q9NY47 1150 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 BTBD7Q9P203 1132 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 SPASTQ9UBP0 616 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 DAPK2Q9UIK4 370 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 SLC30A1Q9Y6M5 507 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 O00370 1275 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 PHGDHO43175 533 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 EPB42P16452 691 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 ITGB6P18564 788 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 WASHC5Q12768 1159 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 STX5Q13190 355 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 MADCAM1Q13477 382 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 BFSP2Q13515 415 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 NFYCQ13952 458 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 KBTBD12Q3ZCT8 623 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 FIGNQ5HY92 759 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 PTRHD1Q6GMV3 140 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 RIBC1Q8N443 379 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 ZC3H15Q8WU90 426 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 TFB1MQ8WVM0 346 aaKnown RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 ZBTB45Q96K62 511 aaPredicted RBP8.96□□□□□ -0.98
RTN3-202ENST00000339997 ZBED2Q9BTP6 218 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 C2orf40Q9H1Z8 148 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 RNPEPL1Q9HAU8 725 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 TCF7L2Q9NQB0 619 aa8.96□□□□□ -0.98
RTN3-202ENST00000339997 IMPAD1Q9NX62 359 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms