RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PRKCSHP14314 528 aaPredicted RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 MRE11P49959 708 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 BCAT1P54687 386 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 EML3Q32P44 896 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 TCP11X2Q5H9J9 407 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 LCLAT1Q6UWP7 414 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 CCDC186Q7Z3E2 898 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 SCD5Q86SK9 330 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 SIX2Q9NPC8 291 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 CYLDQ9NQC7 956 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 ANO10Q9NW15 660 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 DUS2Q9NX74 493 aaKnown RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 APEX2Q9UBZ4 518 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 MRPS17Q9Y2R5 130 aaKnown RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 A0A1W2PQH9 124 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 H0Y858 1186 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 XPO1O14980 1071 aaKnown RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 TBX18O95935 607 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 BRD2P25440 801 aaKnown RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 BST2Q10589 180 aaKnown RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 CNGA2Q16280 664 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 CDKAL1Q5VV42 579 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 DPY19L2P1Q6NXN4 242 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 RALGPS2Q86X27 583 aaPredicted RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 MSANTD3Q96H12 275 aa16.67■□□□□ 0.26
CLN3-201ENST00000333496 AJAP1Q9UKB5 411 aaPredicted RBP16.67■□□□□ 0.26
CLN3-201ENST00000333496 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLN3-201ENST00000333496 FANCMQ8IYD8 2048 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 BECN2A8MW95 431 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 PTPN5P54829 565 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 NHLH1Q02575 133 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 KCNMA1Q12791 1236 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 PDGFRLQ15198 375 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 STX1AQ16623 288 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 ENOSF1Q7L5Y1 443 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 WBP2Q969T9 261 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 ECT2Q9H8V3 914 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-201ENST00000333496 CFAP97Q9P2B7 532 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 HESX1Q9UBX0 185 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 NUDT5Q9UKK9 219 aa16.66■□□□□ 0.26
CLN3-201ENST00000333496 CACNA1HO95180 2353 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 SCAMP3O14828 347 aaKnown RBP16.65■□□□□ 0.26
CLN3-201ENST00000333496 GABBR2O75899 941 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 CHRNB1P11230 501 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 KRT5P13647 590 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 EEF1GP26641 437 aaKnown RBP16.65■□□□□ 0.26
CLN3-201ENST00000333496 RPS9P46781 194 aaKnown RBP16.65■□□□□ 0.26
CLN3-201ENST00000333496 PLA2G4AP47712 749 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 IFNAR2P48551 515 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 TKTL1P51854 596 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 MFAP3P55082 362 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 SLC8A3P57103 927 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 ARHGAP44Q17R89 818 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 CAVIN1Q6NZI2 390 aaKnown RBP16.65■□□□□ 0.26
CLN3-201ENST00000333496 BHLHA9Q7RTU4 235 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 SLC35F5Q8WV83 523 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 NDRG1Q92597 394 aaKnown RBP16.65■□□□□ 0.26
CLN3-201ENST00000333496 ACP6Q9NPH0 428 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 FANCLQ9NW38 375 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 KIAA1549LQ6ZVL6 1849 aa16.65■□□□□ 0.26
CLN3-201ENST00000333496 NCAM2O15394 837 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 SETSIPP0DME0 302 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 RARGP13631 454 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 GJA4P35212 333 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 PSEN1P49768 467 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 TYRO3Q06418 890 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 PON2Q15165 354 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 ANGPT1Q15389 498 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 PM20D1Q6GTS8 502 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 PMF1Q6P1K2 205 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 C1orf228Q6PIY5 440 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 ADGRG2Q8IZP9 1017 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 ZNF276Q8N554 614 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 KIAA1958Q8N8K9 716 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 KCTD13Q8WZ19 329 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 KLF16Q9BXK1 252 aaPredicted RBP16.64■□□□□ 0.25
CLN3-201ENST00000333496 ULBP1Q9BZM6 244 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 LMAN1LQ9HAT1 526 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 NAGPAQ9UK23 515 aa16.64■□□□□ 0.25
CLN3-201ENST00000333496 M0QYV0 167 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 MDM4O15151 490 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 ATP5C1P36542 298 aaKnown RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 PLA2G5P39877 138 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 ADIGQ0VDE8 80 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 NCAPHQ15003 741 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 KRT31Q15323 416 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 STILQ15468 1287 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 NAIF1Q69YI7 327 aaPredicted RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 DDX42Q86XP3 938 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-201ENST00000333496 C1orf210Q8IVY1 113 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 MAML2Q8IZL2 1156 aaPredicted RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 SHC3Q92529 594 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 SECISBP2LQ93073 1101 aaKnown RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 ATP2A3Q93084 1043 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 FAM81BQ96LP2 452 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 HSD3B7Q9H2F3 369 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 FBRSL1Q9HCM7 1045 aaKnown RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 TAB2Q9NYJ8 693 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 CLIC5Q9NZA1 410 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms