RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ERGIC3Q9Y282 383 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 LINC00854A0A1B0GVQ3 168 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ARHGAP42A6NI28 874 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 KLHL41O60662 606 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ZC3H11AO75152 810 aaKnown RBP eCLIP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 GABBR2O75899 941 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ABCB4P21439 1286 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ALDH1A3P47895 512 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ALDH3B2P48448 385 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 THOP1P52888 689 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ARL4CP56559 192 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 TFAP4Q01664 338 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 BOLA3Q53S33 107 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 RABGAP1LQ5R372 815 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 CYFIP1Q7L576 1253 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 CYP2U1Q7Z449 544 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 RALGPS2Q86X27 583 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 CCDC105Q8IYK2 499 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 SLC30A5Q8TAD4 765 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ACMSDQ8TDX5 336 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 C12orf43Q96C57 262 aaKnown RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ISOC1Q96CN7 298 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 OXNAD1Q96HP4 312 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ACAP3Q96P50 834 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 TP63Q9H3D4 680 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 FANCEQ9HB96 536 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 WDR6Q9NNW5 1121 aaKnown RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ANLNQ9NQW6 1124 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 KDM3AQ9Y4C1 1321 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 GTPBP10A4D1E9 387 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 GOLGA8IPA6NC78 632 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 POTECB2RU33 542 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 PEX1O43933 1283 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 MYO1DO94832 1006 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CD247P20963 164 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 RPA1P27694 616 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 ADCY8P40145 1251 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 BMXP51813 675 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 GALCP54803 685 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 HADHBP55084 474 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 TPTEP56180 551 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 OGFRL1Q5TC84 451 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CYP4A22Q5TCH4 519 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 KYAT3Q6YP21 454 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 GPR180Q86V85 440 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CLIP4Q8N3C7 705 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 OLFM1Q99784 485 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 MXD3Q9BW11 206 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 C17orf75Q9HAS0 396 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 ALG13Q9NP73 1137 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 MIF4GDA9UHW6 222 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CASQ2O14958 399 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 B3GALNT1O75752 331 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CTNNA2P26232 953 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 CASP5P51878 434 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 ZNF135P52742 658 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 MRPS9P82933 396 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 EVX2Q03828 476 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 EPHA7Q15375 998 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 PKN2Q16513 984 aaKnown RBP12.3□□□□□ -0.44
SHMT2-201ENST00000328923 KCNK18Q7Z418 384 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 DEPDC4Q8N2C3 294 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 C12orf4Q9NQ89 552 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 JAG2Q9Y219 1238 aa12.3□□□□□ -0.44
SHMT2-201ENST00000328923 TCRBV7S2A1N4TA0A589 114 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CFAP99D6REC4 459 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 TSPAN1O60635 241 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 GMNNO75496 209 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ATE1O95260 518 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ACTN1P12814 892 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 SLC9A1P19634 815 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 PRDX6P30041 224 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 NR4A2P43354 598 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 DNAL1Q4LDG9 190 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 SLC15A4Q8N697 577 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CCDC124Q96CT7 223 aaKnown RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 NUF2Q9BZD4 464 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 SHCBP1LQ9BZQ2 653 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 WNT8AQ9H1J5 351 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 C12orf65Q9H3J6 166 aaKnown RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 DAPK2Q9UIK4 370 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 RAB26Q9ULW5 256 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 PADI4Q9UM07 663 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 MTO1Q9Y2Z2 717 aaKnown RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CAPN14A8MX76 684 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CYP2D6P10635 497 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 PRKCAP17252 672 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 NELFEP18615 380 aaKnown RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ADRA1DP25100 572 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 BMPR1AP36894 532 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ARL1P40616 181 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ZNF132P52740 706 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 NDST2P52849 883 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CREB5Q02930 508 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 BNIP3Q12983 259 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 CYP1B1Q16678 543 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 HP1BP3Q5SSJ5 553 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-201ENST00000328923 WDR78Q5VTH9 848 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 HEATR4Q86WZ0 1026 aa12.29□□□□□ -0.44
SHMT2-201ENST00000328923 ZFPM1Q8IX07 1006 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms