RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PCSK6P29122 969 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PDIA3P30101 505 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 GKP32189 559 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ACVRL1P37023 503 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TRAPPC10P48553 1259 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PDE1AP54750 535 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 SUMO2P61956 95 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TRIM14Q14142 442 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PTK2BQ14289 1009 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 SPARCL1Q14515 664 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ST3GAL2Q16842 350 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ERCC6LQ2NKX8 1250 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TRIM71Q2Q1W2 868 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TMTC4Q5T4D3 741 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 ERAP2Q6P179 960 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PARS2Q7L3T8 475 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 GRASPQ7Z6J2 395 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 GATAD2AQ86YP4 633 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 LRRC71Q8N4P6 559 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 FAM71BQ8TC56 605 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 IPO4Q8TEX9 1081 aaKnown RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 GRAMD1AQ96CP6 724 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 LTV1Q96GA3 475 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-201ENST00000326004 TTPALQ9BTX7 342 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 PTPRHQ9HD43 1115 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 SLC27A6Q9Y2P4 619 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 RIPOR2Q9Y4F9 1068 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 DTNAQ9Y4J8 743 aa3.94□□□□□ -1.78
HMGB1-201ENST00000326004 EXOC5O00471 708 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 PIP5K1BO14986 540 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 KIAA0355O15063 1070 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NPC1O15118 1278 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 RAMP2O60895 175 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 VNN1O95497 513 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NTSR2O95665 410 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 ITGA5P08648 1049 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NPPBP16860 134 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NTSR1P30989 418 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 POLE2P56282 527 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 FHL2Q14192 279 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 ELF2Q15723 593 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 PFKFB4Q16877 469 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 TBC1D25Q3MII6 688 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 CCDC38Q502W7 563 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 ARHGAP15Q53QZ3 475 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 DENND2CQ68D51 928 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 TLDC1Q6P9B6 456 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 CLEC9AQ6UXN8 241 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 Q6ZWC4 215 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 ZNF804AQ7Z570 1209 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 MRGPRGQ86SM5 289 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 TTC30AQ86WT1 665 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 LDLRAD3Q86YD5 345 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 RASGRP3Q8IV61 690 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 FSTL5Q8N475 847 aaPredicted RBP3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NGDNQ8NEJ9 315 aaKnown RBP3.93□□□□□ -1.78
HMGB1-201ENST00000326004 SUN3Q8TAQ9 357 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 EID2BQ96D98 161 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 WDR24Q96S15 920 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 HAPLN3Q96S86 360 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 RMDN3Q96TC7 470 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 PRPF18Q99633 342 aaKnown RBP3.93□□□□□ -1.78
HMGB1-201ENST00000326004 NUDT22Q9BRQ3 303 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 OBP2BQ9NPH6 170 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 DUSP22Q9NRW4 184 aa3.93□□□□□ -1.78
HMGB1-201ENST00000326004 CCNL1Q9UK58 526 aaPredicted RBP3.93□□□□□ -1.78
HMGB1-201ENST00000326004 A0A087X1B8 175 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 AQP12BA6NM10 295 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 LINC00473A8K010 186 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 LGALS16A8MUM7 142 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 QSOX1O00391 747 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 ZSCAN9O15535 394 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 TMPRSS11DO60235 418 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 PMPCBO75439 489 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 WDR47O94967 919 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 NPSP0C0P6 89 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 EBLN1P0CF75 366 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SRGAP2BP0DMP2 458 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 TMEM225BP0DP42 221 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CTGFP29279 349 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CXCR5P32302 372 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CYP2C18P33260 490 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 HTR7P34969 479 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SERPINF1P36955 418 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 GRK6P43250 576 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 RARRES1P49788 294 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CCT8P50990 548 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 DGKQP52824 942 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 INHBCP55103 352 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SOX10P56693 466 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 EIF4A1P60842 406 aaKnown RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SIM1P81133 766 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 DPTQ07507 201 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 GALNT1Q10472 559 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 FOXO1Q12778 655 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 DHX8Q14562 1220 aaKnown RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 ACOX1Q15067 660 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 ZRSR2Q15696 482 aaKnown RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CYP1B1Q16678 543 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 FAM153CQ494X1 144 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms