RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ITFG1Q8TB96 612 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 HDAC7Q8WUI4 952 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 CYP2S1Q96SQ9 504 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 UBXN6Q9BZV1 441 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 S1PR5Q9H228 398 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 ATXN3LQ9H3M9 355 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 TRPC7Q9HCX4 862 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 DZANK1Q9NVP4 752 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 REXO2Q9Y3B8 237 aaKnown RBP19.08■□□□□ 0.64
HMGA1-201ENST00000311487 USP3Q9Y6I4 520 aa19.08■□□□□ 0.64
HMGA1-201ENST00000311487 TADA3O75528 432 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 DAOAP59103 153 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 MRPS5P82675 430 aaKnown RBP19.07■□□□□ 0.64
HMGA1-201ENST00000311487 FAM102AQ5T9C2 384 aaPredicted RBP19.07■□□□□ 0.64
HMGA1-201ENST00000311487 TXNDC8Q6A555 127 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 ELMSAN1Q6PJG2 1045 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 POTEHQ6S545 545 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 PDZD4Q76G19 769 aaPredicted RBP19.07■□□□□ 0.64
HMGA1-201ENST00000311487 BHLHA9Q7RTU4 235 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 SCD5Q86SK9 330 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 PHF13Q86YI8 300 aaPredicted RBP19.07■□□□□ 0.64
HMGA1-201ENST00000311487 EMC1Q8N766 993 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 STK32AQ8WU08 396 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 ZNF653Q96CK0 615 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 ARHGEF26Q96DR7 871 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 ISCUQ9H1K1 167 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 IL21Q9HBE4 155 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 PNPLA8Q9NP80 782 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 NENFQ9UMX5 172 aa19.07■□□□□ 0.64
HMGA1-201ENST00000311487 C2orf78A6NCI8 922 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 RCCD1A6NED2 376 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 RTN3O95197 1032 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 GZMAP12544 262 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 CYLC1P35663 651 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 RPL34P49207 117 aaKnown RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 OLFML1Q6UWY5 402 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 MAFAQ8NHW3 353 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 MSLNLQ96KJ4 702 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 TRIM7Q9C029 511 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 SMG9Q9H0W8 520 aaKnown RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 ADAM7Q9H2U9 754 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 FBXO44Q9H4M3 255 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 CCSER2Q9H7U1 834 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 UBE2ZQ9H832 354 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 METTL5Q9NRN9 209 aaKnown RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 PCDHA13Q9Y5I0 950 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 NOTCH4Q99466 2003 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 MYO16Q9Y6X6 1858 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 MDM4O15151 490 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 HOXA9P31269 272 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 ACADSBP45954 432 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 GABRB2P47870 512 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 SPA17Q15506 151 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 TEAD2Q15562 447 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 GPR149Q86SP6 731 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 CCDC170Q8IYT3 715 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 ADAM32Q8TC27 787 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 SLITRK1Q96PX8 696 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 IL37Q9NZH6 218 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 CNOT8Q9UFF9 292 aaKnown RBP19.06■□□□□ 0.64
HMGA1-201ENST00000311487 NAALADL1Q9UQQ1 740 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 SCML2Q9UQR0 700 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 PATJQ8NI35 1801 aa19.06■□□□□ 0.64
HMGA1-201ENST00000311487 CCP110O43303 1012 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 C1RP00736 705 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 F11P03951 625 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 MAGEA1P43355 309 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 YWHAGP61981 247 aaKnown RBP eCLIP19.05■□□□□ 0.64
HMGA1-201ENST00000311487 RPL7AP62424 266 aaKnown RBP19.05■□□□□ 0.64
HMGA1-201ENST00000311487 SLC6A3Q01959 620 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 SYPL2Q5VXT5 272 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 BSPRYQ5W0U4 402 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 PM20D1Q6GTS8 502 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 GET4Q7L5D6 327 aaPredicted RBP19.05■□□□□ 0.64
HMGA1-201ENST00000311487 MAB21L3Q8N8X9 362 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 JOSD2Q8TAC2 188 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 SHKBP1Q8TBC3 707 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 KHSRPQ92945 711 aaKnown RBP eCLIP19.05■□□□□ 0.64
HMGA1-201ENST00000311487 HLA-CQ95604 372 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 BTBD6Q96KE9 485 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 MYRFLQ96LU7 910 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 SLC22A12Q96S37 553 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 TTLL2Q9BWV7 592 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 CNGB3Q9NQW8 809 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 ASB3Q9Y575 518 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 DUSP10Q9Y6W6 482 aa19.05■□□□□ 0.64
HMGA1-201ENST00000311487 ZNF840PA6NDX5 716 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 RIOK3O14730 519 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 CEBPBP17676 345 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 PITX1P78337 314 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 COL19A1Q14993 1142 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 CES5AQ6NT32 575 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 ZSWIM3Q96MP5 696 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 SLITRK6Q9H5Y7 841 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 TRIM10Q9UDY6 481 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 MRPS23Q9Y3D9 190 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 SYNJ2BP-COX16A0A087WUM0 186 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 EIF3CLB5ME19 914 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 NCK2O43639 380 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 MOSPD3O75425 235 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms