RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ANKRD20A3Q5VUR7 823 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 IZUMO3Q5VZ72 239 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 C12orf56Q8IXR9 622 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 CLDND1Q9NY35 253 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 DHX15O43143 795 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 TGFB1I1O43294 461 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 ZNF500O60304 480 aaPredicted RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 PMPCBO75439 489 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 PCDH8O95206 1070 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 TAC1P20366 129 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 TUBP50607 506 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SMAD3P84022 425 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC85BQ15834 202 aaPredicted RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC157Q569K6 752 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 VSTM1Q6UX27 236 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 FAM35AQ86V20 835 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 LENG9Q96B70 501 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 MFSD14AQ96MC6 490 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 FZD8Q9H461 694 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 HACD3Q9P035 362 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 PAK5Q9P286 719 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 MYH3P11055 1940 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 A0A0U1RQF3 1178 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 STX7O15400 261 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 PSTPIP1O43586 416 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 COL6A1P12109 1028 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 MRPS25P82663 173 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 PDIA2Q13087 525 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 TARBP2Q15633 366 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 GPR158Q5T848 1215 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 NAPEPLDQ6IQ20 393 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 RBM43Q6ZSC3 357 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 GPR152Q8TDT2 470 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SNF8Q96H20 258 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 BTBD6Q96KE9 485 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SNX27Q96L92 541 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 FOPNLQ96NB1 174 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 EGFL8Q99944 293 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 ST6GALNAC4Q9H4F1 302 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SCUBE2Q9NQ36 999 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 IRS2Q9Y4H2 1338 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 FAM187AA6NFU0 413 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SCAMP3O14828 347 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 KDM1AO60341 852 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 OR4Q2P0C623 313 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SMAD1Q15797 465 aaKnown RBP9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SYCP2LQ5T4T6 812 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 WHAMMQ8TF30 809 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 VCPIP1Q96JH7 1222 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 SLC9A7Q96T83 725 aa9.61□□□□□ -0.87
PTPRE-202ENST00000306042 NDUFS3O75489 264 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CNMDO75829 334 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 LUC7L3O95232 432 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 APBA1Q02410 837 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 PDCLQ13371 301 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 SLC35G1Q2M3R5 365 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TIGD5Q53EQ6 642 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 MCOLN2Q8IZK6 566 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 MAB21L3Q8N8X9 362 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ANKLE1Q8NAG6 615 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TSR3Q9UJK0 312 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 MORC2Q9Y6X9 1032 aaPredicted RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC88AQ3V6T2 1871 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC78A2IDD5 438 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 A6NNZ2 444 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TLR5O60602 858 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 SLCO1A2P46721 670 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ZNF131P52739 623 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TUBB8Q3ZCM7 444 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 RARS2Q5T160 578 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ZNF571Q7Z3V5 609 aaPredicted RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 KREMEN2Q8NCW0 462 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 DNAJC7Q99615 494 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TBC1D13Q9NVG8 400 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 MARF1Q9Y4F3 1742 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 RNF40O75150 1001 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 NOS2P35228 1153 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 PLA2G4AP47712 749 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 DHX34Q14147 1143 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 NPY5RQ15761 445 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 VARS2Q5ST30 1063 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ERMARDQ5T6L9 678 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC62Q6P9F0 684 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 C16orf59Q7L2K0 433 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 RASSF3Q86WH2 238 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CACUL1Q86Y37 369 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ZBED8Q8IZ13 594 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 PPM1NQ8N819 430 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 SHDQ96IW2 340 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TGS1Q96RS0 853 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TBCBQ99426 244 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 IL23AQ9NPF7 189 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 ZFATQ9P243 1243 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TJP1Q07157 1748 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 BAZ2AQ9UIF9 1905 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 MYO9BQ13459 2157 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CLDN5O00501 218 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 RASGRF2O14827 1237 aa9.6□□□□□ -0.87
PTPRE-202ENST00000306042 TRUB2O95900 331 aaKnown RBP9.6□□□□□ -0.87
PTPRE-202ENST00000306042 CHEK2O96017 543 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms