RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MAGEB16A2A368 324 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 H3BQF6 201 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 CYB561D2O14569 222 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 DAB1O75553 588 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 HNRNPH1P31943 449 aaKnown RBP19.77■□□□□ 0.75
UPF1-201ENST00000262803 NIPA1Q7RTP0 329 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 SLFN11Q7Z7L1 901 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 RTFDC1Q9BY42 306 aaPredicted RBP19.77■□□□□ 0.75
UPF1-201ENST00000262803 FBXO44Q9H4M3 255 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 PDGFCQ9NRA1 345 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 SPASTQ9UBP0 616 aa19.77■□□□□ 0.75
UPF1-201ENST00000262803 TTLL13PA6NNM8 815 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 MYO1GB0I1T2 1018 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 ADCY3O60266 1144 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 P3H2Q8IVL5 708 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 MTG1Q9BT17 334 aaPredicted RBP19.76■□□□□ 0.75
UPF1-201ENST00000262803 EVA1BQ9NVM1 165 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 SOX13Q9UN79 622 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 IMPDH2P12268 514 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 KCNA3P22001 575 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 METTL7BQ6UX53 244 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 TXNRD3Q86VQ6 643 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 NUP93Q8N1F7 819 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 TCRBV5S4A2TA0A5A2 114 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 SDR42E2A6NKP2 422 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 TRPC1P48995 793 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 BLVRAP53004 296 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 FAXCQ5TGI0 409 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 LRRC6Q86X45 466 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 ZCCHC2Q9C0B9 1178 aaKnown RBP19.76■□□□□ 0.75
UPF1-201ENST00000262803 SARSP49591 514 aaKnown RBP19.76■□□□□ 0.75
UPF1-201ENST00000262803 PPIL2Q13356 520 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 ZNF720Q7Z2F6 126 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 IFNEQ86WN2 208 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 RSPH1Q8WYR4 309 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 DTNBP1Q96EV8 351 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 FAM111AQ96PZ2 611 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 ARMC7Q9H6L4 198 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 RIOX1Q9H6W3 641 aa19.76■□□□□ 0.75
UPF1-201ENST00000262803 UXTQ9UBK9 157 aaPredicted RBP19.76■□□□□ 0.75
UPF1-201ENST00000262803 A0A0A6YYK5 440 aaPredicted RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 CAND2O75155 1236 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 TGM2P21980 687 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 GUCA1AP43080 201 aaPredicted RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 NPTX2P47972 431 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 EARS2Q5JPH6 523 aaKnown RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 TLR8Q9NR97 1041 aaKnown RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 SYNCRIPO60506 623 aaKnown RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 PRIM2P49643 509 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 BST2Q10589 180 aaKnown RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 OVGP1Q12889 678 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 DIS3LQ8TF46 1054 aaKnown RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 CLPBQ9H078 707 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 NOD2Q9HC29 1040 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 VTA1Q9NP79 307 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 WHRNQ9P202 907 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 POLLQ9UGP5 575 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 SEPT3Q9UH03 358 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 PHTF1Q9UMS5 762 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 RHOCP08134 193 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 PCYT1AP49585 367 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 ATXN3P54252 364 aaPredicted RBP19.75■□□□□ 0.75
UPF1-201ENST00000262803 KIAA0895Q8NCT3 520 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 YME1L1Q96TA2 773 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 RNF112Q9ULX5 631 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 B3GAT3O94766 335 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 GLI1P08151 1106 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 DNAJB2P25686 324 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 EPHX2P34913 555 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 TAF2Q6P1X5 1199 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 STARD7Q9NQZ5 370 aa19.75■□□□□ 0.75
UPF1-201ENST00000262803 RRM1P23921 792 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 STARD3Q14849 445 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 DEPDC1Q5TB30 811 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 CYB5D1Q6P9G0 228 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 MTMR8Q96EF0 704 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 ATP11BQ9Y2G3 1177 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 SALL1Q9NSC2 1324 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 ZNF839A8K0R7 811 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 TARSP26639 723 aaKnown RBP19.74■□□□□ 0.75
UPF1-201ENST00000262803 FAM117BQ6P1L5 589 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 TBCBQ99426 244 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 EIF2S1P05198 315 aaKnown RBP19.74■□□□□ 0.75
UPF1-201ENST00000262803 PRKAA2P54646 552 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 FKBP1AP62942 108 aaKnown RBP19.74■□□□□ 0.75
UPF1-201ENST00000262803 NT5DC1Q5TFE4 455 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 RFWD2Q8NHY2 731 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 NLNQ9BYT8 704 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 CDC42EP4Q9H3Q1 356 aaKnown RBP19.74■□□□□ 0.75
UPF1-201ENST00000262803 AHSPQ9NZD4 102 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.74■□□□□ 0.75
UPF1-201ENST00000262803 HOXB8P17481 243 aaPredicted RBP19.74■□□□□ 0.75
UPF1-201ENST00000262803 RRM2P31350 389 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 AVPR1AP37288 418 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 CLEC16AQ2KHT3 1053 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 RETSATQ6NUM9 610 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 TMEM154Q6P9G4 183 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 ZNF333Q96JL9 665 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 AGLP35573 1532 aa19.74■□□□□ 0.75
UPF1-201ENST00000262803 ILDR1Q86SU0 546 aaPredicted RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms